Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29183 | 3' | -57.1 | NC_006150.1 | + | 197716 | 0.74 | 0.500639 |
Target: 5'- cAUGCACaugaauGUGGCGGAG--CCCGAGCGa -3' miRNA: 3'- -UAUGUGg-----CACCGCCUUugGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 103228 | 0.66 | 0.916958 |
Target: 5'- cGUGCGCaGUGGCuGGGAUCCUGcGCGa -3' miRNA: 3'- -UAUGUGgCACCGcCUUUGGGGCuCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 216831 | 0.66 | 0.911233 |
Target: 5'- cUGC-CCGcGGCaauGGAGACCaaGAGCAg -3' miRNA: 3'- uAUGuGGCaCCG---CCUUUGGggCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 91463 | 0.66 | 0.905283 |
Target: 5'- -gGCGCgGUGGaUGGGGuucucaaacACCUCGGGCGg -3' miRNA: 3'- uaUGUGgCACC-GCCUU---------UGGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 58402 | 0.66 | 0.905283 |
Target: 5'- cUGCAUgaUGUGGCGGu-ACCCUGAucgGCGa -3' miRNA: 3'- uAUGUG--GCACCGCCuuUGGGGCU---CGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 202877 | 0.67 | 0.892716 |
Target: 5'- -gGCACCuGgaacGCGGgcGCCUCGGGCGg -3' miRNA: 3'- uaUGUGG-Cac--CGCCuuUGGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 135083 | 0.67 | 0.892716 |
Target: 5'- -gACGCUGggaaGGCGGAAGCUCauGGCGa -3' miRNA: 3'- uaUGUGGCa---CCGCCUUUGGGgcUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 127528 | 0.67 | 0.892716 |
Target: 5'- uGUGCGCCGUgGGCucaaAAACCaaGAGCAa -3' miRNA: 3'- -UAUGUGGCA-CCGcc--UUUGGggCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 81377 | 0.68 | 0.817576 |
Target: 5'- -gACGCUGcucGCGGGAAagcagcuuuuCCCCGAGCAc -3' miRNA: 3'- uaUGUGGCac-CGCCUUU----------GGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 181273 | 0.7 | 0.745687 |
Target: 5'- -gACGCgGagGGCGGGAgaggcggcuGCCCUGGGCGg -3' miRNA: 3'- uaUGUGgCa-CCGCCUU---------UGGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 220759 | 0.71 | 0.697403 |
Target: 5'- --uUAgCGUGGUGGGAGCUCCggGAGCAu -3' miRNA: 3'- uauGUgGCACCGCCUUUGGGG--CUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 150159 | 0.67 | 0.865003 |
Target: 5'- -cGCACCGUGGCcggcuuccaGAGACCCaucGGCGg -3' miRNA: 3'- uaUGUGGCACCGc--------CUUUGGGgc-UCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 220191 | 0.67 | 0.865003 |
Target: 5'- -cACAuCCGUGGCuGGAAuaUCUGAGCGa -3' miRNA: 3'- uaUGU-GGCACCG-CCUUugGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 216635 | 0.67 | 0.857563 |
Target: 5'- --uCGCCGUGGCGGcugcGGugCUCG-GCAg -3' miRNA: 3'- uauGUGGCACCGCC----UUugGGGCuCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 857 | 0.69 | 0.807348 |
Target: 5'- cGUGCGCCGggcgccGGCGGuguagacgguguGGCCgCGAGCGc -3' miRNA: 3'- -UAUGUGGCa-----CCGCCu-----------UUGGgGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 9124 | 0.7 | 0.745687 |
Target: 5'- uGUACACCGgauucuUGGUGGAAaaGCCCCGuccCAa -3' miRNA: 3'- -UAUGUGGC------ACCGCCUU--UGGGGCuc-GU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 149521 | 0.7 | 0.742846 |
Target: 5'- uUGCGCCGUcgccuacgacccgaGGUGGAAGCCCCucGUc -3' miRNA: 3'- uAUGUGGCA--------------CCGCCUUUGGGGcuCGu -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 136999 | 0.7 | 0.714991 |
Target: 5'- -cGCGCCacucauccuCGGGAACCCCGAGCGa -3' miRNA: 3'- uaUGUGGcacc-----GCCUUUGGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 182896 | 0.7 | 0.707198 |
Target: 5'- -gAgGCCucGGCGGggGCUCCGGGUAg -3' miRNA: 3'- uaUgUGGcaCCGCCuuUGGGGCUCGU- -5' |
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29183 | 3' | -57.1 | NC_006150.1 | + | 88166 | 0.66 | 0.927726 |
Target: 5'- --cCACCGaGGCuGcGAGGCCCCGgugGGCGg -3' miRNA: 3'- uauGUGGCaCCG-C-CUUUGGGGC---UCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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