Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29183 | 5' | -53.9 | NC_006150.1 | + | 92837 | 1.07 | 0.007284 |
Target: 5'- cGUUGCCAGUCAUCCCUGGCAAGACAUg -3' miRNA: 3'- -CAACGGUCAGUAGGGACCGUUCUGUA- -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 168936 | 0.7 | 0.864477 |
Target: 5'- -cUGUCGGUCAUCugggccgcuguCCUGGCAAGuCGg -3' miRNA: 3'- caACGGUCAGUAG-----------GGACCGUUCuGUa -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 207717 | 0.69 | 0.899861 |
Target: 5'- --aGCCAGgc--CCCUGGCAcGGCGUg -3' miRNA: 3'- caaCGGUCaguaGGGACCGUuCUGUA- -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 218026 | 0.68 | 0.92932 |
Target: 5'- --gGCCGGaUCAUCUgaGGCcAGACAg -3' miRNA: 3'- caaCGGUC-AGUAGGgaCCGuUCUGUa -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 190176 | 0.68 | 0.934478 |
Target: 5'- --cGCCAGUUuaaacugCCCUGGCAA-ACAUu -3' miRNA: 3'- caaCGGUCAGua-----GGGACCGUUcUGUA- -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 202670 | 0.67 | 0.93939 |
Target: 5'- -cUGUCAGUCAUCCg-GGCAgcccugAGGCGc -3' miRNA: 3'- caACGGUCAGUAGGgaCCGU------UCUGUa -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 146834 | 0.66 | 0.973031 |
Target: 5'- --cGUCAGUCAcagucuUCCCcGGuCGAGACGc -3' miRNA: 3'- caaCGGUCAGU------AGGGaCC-GUUCUGUa -5' |
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29183 | 5' | -53.9 | NC_006150.1 | + | 77761 | 0.66 | 0.975678 |
Target: 5'- --cGCCAagCGcUCCgUGGCGAGACGUu -3' miRNA: 3'- caaCGGUcaGU-AGGgACCGUUCUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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