miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29184 3' -47.8 NC_006150.1 + 33451 0.66 0.999928
Target:  5'- -aACGCUAcCAUUCAugGGCaaaCCAugaauaacaUAGCa -3'
miRNA:   3'- uaUGCGAUuGUAAGU--UCGg--GGU---------AUCG- -5'
29184 3' -47.8 NC_006150.1 + 118706 0.66 0.999928
Target:  5'- cUGCGCUGGaugcgGUUCAAGgCCUgucgacagagcGUGGCg -3'
miRNA:   3'- uAUGCGAUUg----UAAGUUCgGGG-----------UAUCG- -5'
29184 3' -47.8 NC_006150.1 + 123779 0.66 0.999928
Target:  5'- cUGCGCauucACAUUCAgGGUgCUGUAGCg -3'
miRNA:   3'- uAUGCGau--UGUAAGU-UCGgGGUAUCG- -5'
29184 3' -47.8 NC_006150.1 + 113657 0.66 0.999906
Target:  5'- gAUGCgGCUGGCG---AGGCCCCGcGGUc -3'
miRNA:   3'- -UAUG-CGAUUGUaagUUCGGGGUaUCG- -5'
29184 3' -47.8 NC_006150.1 + 172537 0.66 0.999906
Target:  5'- gAUGCGCgAACAUgcgCAAG-UCCAUAcGCa -3'
miRNA:   3'- -UAUGCGaUUGUAa--GUUCgGGGUAU-CG- -5'
29184 3' -47.8 NC_006150.1 + 1852 0.66 0.999877
Target:  5'- -cGCGCUcGCGac--GGCCCCAUcaaaAGCg -3'
miRNA:   3'- uaUGCGAuUGUaaguUCGGGGUA----UCG- -5'
29184 3' -47.8 NC_006150.1 + 52297 0.66 0.99984
Target:  5'- -gACGC-AGCAggauaAAGUCCCAaaUAGCg -3'
miRNA:   3'- uaUGCGaUUGUaag--UUCGGGGU--AUCG- -5'
29184 3' -47.8 NC_006150.1 + 23923 0.67 0.999738
Target:  5'- aGUACGUUGAUcaggAUUCcAGCCUCG-AGCu -3'
miRNA:   3'- -UAUGCGAUUG----UAAGuUCGGGGUaUCG- -5'
29184 3' -47.8 NC_006150.1 + 181636 0.67 0.999667
Target:  5'- gGUGCGCUGGCGgagCGagaAGCCgCAgcaacGGCa -3'
miRNA:   3'- -UAUGCGAUUGUaa-GU---UCGGgGUa----UCG- -5'
29184 3' -47.8 NC_006150.1 + 201585 0.68 0.999194
Target:  5'- gAUGCgGCUuuC--UUAAGCUCCGUGGCa -3'
miRNA:   3'- -UAUG-CGAuuGuaAGUUCGGGGUAUCG- -5'
29184 3' -47.8 NC_006150.1 + 218171 0.68 0.999194
Target:  5'- aGUGCGUUGuuuACAgcgCGAGCCgCGcUAGCg -3'
miRNA:   3'- -UAUGCGAU---UGUaa-GUUCGGgGU-AUCG- -5'
29184 3' -47.8 NC_006150.1 + 69912 0.68 0.999194
Target:  5'- -aGCGCgaaccuCGUcgUUGAGCCCCAgAGCu -3'
miRNA:   3'- uaUGCGauu---GUA--AGUUCGGGGUaUCG- -5'
29184 3' -47.8 NC_006150.1 + 106400 0.68 0.999177
Target:  5'- gAUGCGCUcuACAUUCAGGagcgccuUCCCA-AGCu -3'
miRNA:   3'- -UAUGCGAu-UGUAAGUUC-------GGGGUaUCG- -5'
29184 3' -47.8 NC_006150.1 + 60375 0.68 0.999011
Target:  5'- -aGCGUgguauuGCAU--GAGUCCCAUGGCc -3'
miRNA:   3'- uaUGCGau----UGUAagUUCGGGGUAUCG- -5'
29184 3' -47.8 NC_006150.1 + 207902 0.68 0.999011
Target:  5'- -cGC-CUAACgg-CGGGCCCCGaGGCg -3'
miRNA:   3'- uaUGcGAUUGuaaGUUCGGGGUaUCG- -5'
29184 3' -47.8 NC_006150.1 + 148405 0.68 0.998792
Target:  5'- --gUGCUGGCGgugCgGAGUCUCAUAGCa -3'
miRNA:   3'- uauGCGAUUGUaa-G-UUCGGGGUAUCG- -5'
29184 3' -47.8 NC_006150.1 + 11236 0.69 0.998231
Target:  5'- uUAUuuUGACGUUCAGuCCCUGUGGCg -3'
miRNA:   3'- uAUGcgAUUGUAAGUUcGGGGUAUCG- -5'
29184 3' -47.8 NC_006150.1 + 132784 0.69 0.996987
Target:  5'- aAUGCGCUGGCg--CAAcGCUCUcgAGCg -3'
miRNA:   3'- -UAUGCGAUUGuaaGUU-CGGGGuaUCG- -5'
29184 3' -47.8 NC_006150.1 + 125804 0.69 0.996987
Target:  5'- -gACGCagguaUAGCAUcUGAGCCCCcgAUAGCc -3'
miRNA:   3'- uaUGCG-----AUUGUAaGUUCGGGG--UAUCG- -5'
29184 3' -47.8 NC_006150.1 + 216375 0.69 0.996438
Target:  5'- ---aGCUgagGACGUUuaaCAGGCCCCAgGGCu -3'
miRNA:   3'- uaugCGA---UUGUAA---GUUCGGGGUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.