miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29184 5' -55.9 NC_006150.1 + 460 0.68 0.8962
Target:  5'- cCCGggggucGCGGC-GGggGGCgucaaaaCACGCg -3'
miRNA:   3'- -GGCaguu--CGCCGaCCuuCCGa------GUGCG- -5'
29184 5' -55.9 NC_006150.1 + 33201 0.66 0.966476
Target:  5'- uCCGUCuGGGgGGuUUGGuGGGCUUAuUGCg -3'
miRNA:   3'- -GGCAG-UUCgCC-GACCuUCCGAGU-GCG- -5'
29184 5' -55.9 NC_006150.1 + 69620 0.68 0.914248
Target:  5'- uCCGUCAAcaucccaCGGUUGcugcGGCUCACGUg -3'
miRNA:   3'- -GGCAGUUc------GCCGACcuu-CCGAGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 69747 0.71 0.751859
Target:  5'- cCUG-CGGGuCGGCUGGAAGGCgguguugggccUCAaCGCc -3'
miRNA:   3'- -GGCaGUUC-GCCGACCUUCCG-----------AGU-GCG- -5'
29184 5' -55.9 NC_006150.1 + 70311 0.67 0.930289
Target:  5'- -aGUCGcgcucGGCGcaGCUGGAAGcGCUCguggcgGCGCu -3'
miRNA:   3'- ggCAGU-----UCGC--CGACCUUC-CGAG------UGCG- -5'
29184 5' -55.9 NC_006150.1 + 75806 0.67 0.94431
Target:  5'- cCCGUgAAGCGcaugcuGCUGGAuaAGGagcagCugGCg -3'
miRNA:   3'- -GGCAgUUCGC------CGACCU--UCCga---GugCG- -5'
29184 5' -55.9 NC_006150.1 + 81748 0.67 0.919819
Target:  5'- -aGUCAAGCGGgUGGGAuaagCAUGCa -3'
miRNA:   3'- ggCAGUUCGCCgACCUUccgaGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 82204 0.7 0.814281
Target:  5'- cCCGgaGAGCgGGCUGGAGGucuGCUCGCa- -3'
miRNA:   3'- -GGCagUUCG-CCGACCUUC---CGAGUGcg -5'
29184 5' -55.9 NC_006150.1 + 86427 0.66 0.95993
Target:  5'- aCCGUCGaagggGGCGGCgcgccAGGCgCACGg -3'
miRNA:   3'- -GGCAGU-----UCGCCGaccu-UCCGaGUGCg -5'
29184 5' -55.9 NC_006150.1 + 88361 0.69 0.846706
Target:  5'- uUGUCGAGgGGgaGG-GGGCggcgCAUGCa -3'
miRNA:   3'- gGCAGUUCgCCgaCCuUCCGa---GUGCG- -5'
29184 5' -55.9 NC_006150.1 + 88804 0.74 0.601423
Target:  5'- gCCGUCGcauagccGGCGGCUGGA-GGCgaccuggaugcgggUCGCGg -3'
miRNA:   3'- -GGCAGU-------UCGCCGACCUuCCG--------------AGUGCg -5'
29184 5' -55.9 NC_006150.1 + 92366 0.69 0.876206
Target:  5'- uCUGggcCGGGCGGUggGGAuucGGGCgagUCGCGCa -3'
miRNA:   3'- -GGCa--GUUCGCCGa-CCU---UCCG---AGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 92458 0.67 0.935186
Target:  5'- aCCGUCAcAGCGGC-GaGGAGGCggugacCGUg -3'
miRNA:   3'- -GGCAGU-UCGCCGaC-CUUCCGagu---GCG- -5'
29184 5' -55.9 NC_006150.1 + 93144 1.14 0.002325
Target:  5'- uCCGUCAAGCGGCUGGAAGGCUCACGCa -3'
miRNA:   3'- -GGCAGUUCGCCGACCUUCCGAGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 105330 0.66 0.966476
Target:  5'- gCCGUacucaguuGCGGCUGGcucaguuucuGGCUCA-GCu -3'
miRNA:   3'- -GGCAguu-----CGCCGACCuu--------CCGAGUgCG- -5'
29184 5' -55.9 NC_006150.1 + 105699 0.67 0.933254
Target:  5'- uCCGUCGGGCuggacauGGCagcucccgucuaugUGGGAGGUUUuuugguGCGCu -3'
miRNA:   3'- -GGCAGUUCG-------CCG--------------ACCUUCCGAG------UGCG- -5'
29184 5' -55.9 NC_006150.1 + 106248 0.71 0.797106
Target:  5'- gCCGUCGGGCuguagagaGGaCUGGGauggAGGUcCGCGCg -3'
miRNA:   3'- -GGCAGUUCG--------CC-GACCU----UCCGaGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 107138 0.68 0.908452
Target:  5'- cUCGg-AAGCGGUU-GAAGGCUCaccauACGCg -3'
miRNA:   3'- -GGCagUUCGCCGAcCUUCCGAG-----UGCG- -5'
29184 5' -55.9 NC_006150.1 + 109071 0.68 0.894287
Target:  5'- uCCGUCGAGCccaguauaccuGGaCUGuGAAGGUgaacgugagcgcuaUCACGUg -3'
miRNA:   3'- -GGCAGUUCG-----------CC-GAC-CUUCCG--------------AGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 111501 0.7 0.830833
Target:  5'- gCUGgcuGGCGGCUGaGAuGGUcgUCGCGCa -3'
miRNA:   3'- -GGCaguUCGCCGAC-CUuCCG--AGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.