Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29184 | 5' | -55.9 | NC_006150.1 | + | 119548 | 0.67 | 0.920364 |
Target: 5'- gCCGUCGAGCuucuucccaaGGUUGGGAuccccgccgacuucCUCACGCa -3' miRNA: 3'- -GGCAGUUCG----------CCGACCUUcc------------GAGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 81748 | 0.67 | 0.919819 |
Target: 5'- -aGUCAAGCGGgUGGGAuaagCAUGCa -3' miRNA: 3'- ggCAGUUCGCCgACCUUccgaGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 113646 | 0.68 | 0.914248 |
Target: 5'- -aGUCGGacggagauGCGGCUGGcGAGGCcC-CGCg -3' miRNA: 3'- ggCAGUU--------CGCCGACC-UUCCGaGuGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 69620 | 0.68 | 0.914248 |
Target: 5'- uCCGUCAAcaucccaCGGUUGcugcGGCUCACGUg -3' miRNA: 3'- -GGCAGUUc------GCCGACcuu-CCGAGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 107138 | 0.68 | 0.908452 |
Target: 5'- cUCGg-AAGCGGUU-GAAGGCUCaccauACGCg -3' miRNA: 3'- -GGCagUUCGCCGAcCUUCCGAG-----UGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 122393 | 0.68 | 0.904869 |
Target: 5'- gUCGUCcAGCGGCgcgucaccguGGCUCGgGCa -3' miRNA: 3'- -GGCAGuUCGCCGaccuu-----CCGAGUgCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 460 | 0.68 | 0.8962 |
Target: 5'- cCCGggggucGCGGC-GGggGGCgucaaaaCACGCg -3' miRNA: 3'- -GGCaguu--CGCCGaCCuuCCGa------GUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 171997 | 0.68 | 0.8962 |
Target: 5'- aCCGUC-GGCuuuacCUGGAcGGCUCGCaGCa -3' miRNA: 3'- -GGCAGuUCGcc---GACCUuCCGAGUG-CG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 109071 | 0.68 | 0.894287 |
Target: 5'- uCCGUCGAGCccaguauaccuGGaCUGuGAAGGUgaacgugagcgcuaUCACGUg -3' miRNA: 3'- -GGCAGUUCG-----------CC-GAC-CUUCCG--------------AGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 92366 | 0.69 | 0.876206 |
Target: 5'- uCUGggcCGGGCGGUggGGAuucGGGCgagUCGCGCa -3' miRNA: 3'- -GGCa--GUUCGCCGa-CCU---UCCG---AGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 88361 | 0.69 | 0.846706 |
Target: 5'- uUGUCGAGgGGgaGG-GGGCggcgCAUGCa -3' miRNA: 3'- gGCAGUUCgCCgaCCuUCCGa---GUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 117123 | 0.7 | 0.830833 |
Target: 5'- gUGUUGAGCGGCUgccGGucGGCgaugaucugCACGCc -3' miRNA: 3'- gGCAGUUCGCCGA---CCuuCCGa--------GUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 111501 | 0.7 | 0.830833 |
Target: 5'- gCUGgcuGGCGGCUGaGAuGGUcgUCGCGCa -3' miRNA: 3'- -GGCaguUCGCCGAC-CUuCCG--AGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 201446 | 0.7 | 0.829207 |
Target: 5'- aCCGcCGAGCaGCucugUGGugcguacgacuGGCUCACGCg -3' miRNA: 3'- -GGCaGUUCGcCG----ACCuu---------CCGAGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 82204 | 0.7 | 0.814281 |
Target: 5'- cCCGgaGAGCgGGCUGGAGGucuGCUCGCa- -3' miRNA: 3'- -GGCagUUCG-CCGACCUUC---CGAGUGcg -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 106248 | 0.71 | 0.797106 |
Target: 5'- gCCGUCGGGCuguagagaGGaCUGGGauggAGGUcCGCGCg -3' miRNA: 3'- -GGCAGUUCG--------CC-GACCU----UCCGaGUGCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 132093 | 0.71 | 0.760216 |
Target: 5'- gCCGUCAGGCGGUUGuuuuccaacgcguGAcAGGCagUCGCGg -3' miRNA: 3'- -GGCAGUUCGCCGAC-------------CU-UCCG--AGUGCg -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 69747 | 0.71 | 0.751859 |
Target: 5'- cCUG-CGGGuCGGCUGGAAGGCgguguugggccUCAaCGCc -3' miRNA: 3'- -GGCaGUUC-GCCGACCUUCCG-----------AGU-GCG- -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 88804 | 0.74 | 0.601423 |
Target: 5'- gCCGUCGcauagccGGCGGCUGGA-GGCgaccuggaugcgggUCGCGg -3' miRNA: 3'- -GGCAGU-------UCGCCGACCUuCCG--------------AGUGCg -5' |
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29184 | 5' | -55.9 | NC_006150.1 | + | 149430 | 0.82 | 0.24697 |
Target: 5'- uCCGUCuguuAGCGGCcGGcugcuGAGGCUCugGCg -3' miRNA: 3'- -GGCAGu---UCGCCGaCC-----UUCCGAGugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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