Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29185 | 3' | -58.1 | NC_006150.1 | + | 289 | 0.69 | 0.772025 |
Target: 5'- cCCAgucGCCGucguGCCgagGCCGCggagGACGGCUg -3' miRNA: 3'- -GGU---UGGCuu--CGGg--CGGCGa---CUGUCGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 1277 | 0.66 | 0.902713 |
Target: 5'- gCGACUGGAGCaCCGCCGaacacGAaucCGGCa -3' miRNA: 3'- gGUUGGCUUCG-GGCGGCga---CU---GUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 43293 | 0.68 | 0.81551 |
Target: 5'- aCAugUGu-GCUCGCCGagUGACAGCa -3' miRNA: 3'- gGUugGCuuCGGGCGGCg-ACUGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 48550 | 0.68 | 0.81551 |
Target: 5'- cCCAaaACgGAGGCCgaUGUCGUUGugGGCa -3' miRNA: 3'- -GGU--UGgCUUCGG--GCGGCGACugUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 54338 | 0.68 | 0.78982 |
Target: 5'- -aAACUGggGCCCGuCCGUU-ACAGUUu -3' miRNA: 3'- ggUUGGCuuCGGGC-GGCGAcUGUCGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 60471 | 0.69 | 0.772025 |
Target: 5'- ---uUCGGuguuuAGCUCGCUGUUGACAGCUu -3' miRNA: 3'- gguuGGCU-----UCGGGCGGCGACUGUCGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 72106 | 0.71 | 0.667642 |
Target: 5'- gUCAaguACCuGAAG-CCGCCGCUGuaGCAGCa -3' miRNA: 3'- -GGU---UGG-CUUCgGGCGGCGAC--UGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 74254 | 0.69 | 0.772025 |
Target: 5'- uCCGugCGAAugcgugucGCaaaUGCUGCUGGCGGCg -3' miRNA: 3'- -GGUugGCUU--------CGg--GCGGCGACUGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 85919 | 0.69 | 0.735112 |
Target: 5'- -gGGCCGAGcGCCCaCCGauCUGGCGGCg -3' miRNA: 3'- ggUUGGCUU-CGGGcGGC--GACUGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 88418 | 0.66 | 0.902713 |
Target: 5'- aCGGCCGcgcuGGGUCUGCCGCgGuucCGGCUc -3' miRNA: 3'- gGUUGGC----UUCGGGCGGCGaCu--GUCGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 88514 | 0.68 | 0.81551 |
Target: 5'- cCCAGCCGAGcgcacgcuccGCCCcCCGCcagGGCuGCg -3' miRNA: 3'- -GGUUGGCUU----------CGGGcGGCGa--CUGuCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 88792 | 0.67 | 0.860352 |
Target: 5'- gCGGCCGAugucgccgucgcauAGCCgGCgGCUGGaGGCg -3' miRNA: 3'- gGUUGGCU--------------UCGGgCGgCGACUgUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 90868 | 0.68 | 0.78982 |
Target: 5'- uCguACCGAGaauuGCCUGCUGCUGugguuGCGGCg -3' miRNA: 3'- -GguUGGCUU----CGGGCGGCGAC-----UGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 95727 | 1.01 | 0.009618 |
Target: 5'- cCCAACCGAAGCCCGCCGCUG-CAGCUg -3' miRNA: 3'- -GGUUGGCUUCGGGCGGCGACuGUCGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 114087 | 0.66 | 0.902713 |
Target: 5'- gCCGcccCUGAGGCaccagCUGCCGCUG-CGGCg -3' miRNA: 3'- -GGUu--GGCUUCG-----GGCGGCGACuGUCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 115948 | 0.69 | 0.735112 |
Target: 5'- uCCAACCGcGGCUCGCuCGCcGACAuCa -3' miRNA: 3'- -GGUUGGCuUCGGGCG-GCGaCUGUcGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 119119 | 0.72 | 0.59884 |
Target: 5'- gCAGCCGAGGCCaggGCCGuCUGAaggaAGUa -3' miRNA: 3'- gGUUGGCUUCGGg--CGGC-GACUg---UCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 119625 | 0.66 | 0.908671 |
Target: 5'- gCCuguuACUGggGCCCGUCGCcGuGCccuGCUa -3' miRNA: 3'- -GGu---UGGCuuCGGGCGGCGaC-UGu--CGA- -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 126780 | 0.68 | 0.81551 |
Target: 5'- gCGACCGcgaacGAGCCacaaGCCGCucUGACuGCa -3' miRNA: 3'- gGUUGGC-----UUCGGg---CGGCG--ACUGuCGa -5' |
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29185 | 3' | -58.1 | NC_006150.1 | + | 130723 | 0.66 | 0.89654 |
Target: 5'- aCC-GCCGcAGCCauaGCCGCcUGAC-GCa -3' miRNA: 3'- -GGuUGGCuUCGGg--CGGCG-ACUGuCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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