miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29186 3' -55 NC_006150.1 + 173655 0.65 0.958973
Target:  5'- uUGAGCUGCUgcaaauCCaCUGCACcgGCu -3'
miRNA:   3'- -ACUCGACGAacucc-GG-GACGUGuaUG- -5'
29186 3' -55 NC_006150.1 + 4179 0.66 0.955192
Target:  5'- --cGCUGaaUGAGGaCCCUGCGCc--- -3'
miRNA:   3'- acuCGACgaACUCC-GGGACGUGuaug -5'
29186 3' -55 NC_006150.1 + 125963 0.66 0.951182
Target:  5'- uUGAGCUGCUUuuGGCCa-GCuCAaGCa -3'
miRNA:   3'- -ACUCGACGAAcuCCGGgaCGuGUaUG- -5'
29186 3' -55 NC_006150.1 + 81447 0.66 0.946939
Target:  5'- ---cCUGCUgaggacguucaUGAGGaCCCUGCACAg-- -3'
miRNA:   3'- acucGACGA-----------ACUCC-GGGACGUGUaug -5'
29186 3' -55 NC_006150.1 + 180334 0.66 0.946501
Target:  5'- cGGGCguacuggGUUUGAcggcgacGGUCCUGCuucACAUGCa -3'
miRNA:   3'- aCUCGa------CGAACU-------CCGGGACG---UGUAUG- -5'
29186 3' -55 NC_006150.1 + 149414 0.66 0.942459
Target:  5'- -cGGCUGC-UGAGGCUCUG-GCGgagGCu -3'
miRNA:   3'- acUCGACGaACUCCGGGACgUGUa--UG- -5'
29186 3' -55 NC_006150.1 + 144231 0.66 0.937741
Target:  5'- aGAGUUGCUUGc-GCCUUGCAg--GCg -3'
miRNA:   3'- aCUCGACGAACucCGGGACGUguaUG- -5'
29186 3' -55 NC_006150.1 + 64708 0.71 0.748199
Target:  5'- gGAGCUGCggcucgUGAGGUuuUGUACGg-- -3'
miRNA:   3'- aCUCGACGa-----ACUCCGggACGUGUaug -5'
29186 3' -55 NC_006150.1 + 176531 0.73 0.657681
Target:  5'- gUGAGCUcaaaaGCUUGAGGCUUUGUAU-UGCa -3'
miRNA:   3'- -ACUCGA-----CGAACUCCGGGACGUGuAUG- -5'
29186 3' -55 NC_006150.1 + 118535 0.74 0.585745
Target:  5'- cGcAGCUGCUgcccgGAGGCCgUG-ACAUACg -3'
miRNA:   3'- aC-UCGACGAa----CUCCGGgACgUGUAUG- -5'
29186 3' -55 NC_006150.1 + 101810 1.1 0.003646
Target:  5'- uUGAGCUGCUUGAGGCCCUGCACAUACu -3'
miRNA:   3'- -ACUCGACGAACUCCGGGACGUGUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.