Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 312 | 0.69 | 0.807091 |
Target: 5'- cGCGgagGACG-GCUGCCcgggGUugGCGGuCUGCc -3' miRNA: 3'- -CGCa--CUGCaCGACGG----CG--UGCCuGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 752 | 0.66 | 0.935163 |
Target: 5'- cGCGUGugGcGCUcGCUGCGCcGcCUaGCg -3' miRNA: 3'- -CGCACugCaCGA-CGGCGUGcCuGA-CG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 32609 | 0.74 | 0.53682 |
Target: 5'- gGCGUGucguuggagaaccUGUGCUGgUGCACGGACaGCg -3' miRNA: 3'- -CGCACu------------GCACGACgGCGUGCCUGaCG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 37481 | 0.73 | 0.589048 |
Target: 5'- uGUGUGcAUGUGCUGCUcuacgGCACGGugaUGCu -3' miRNA: 3'- -CGCAC-UGCACGACGG-----CGUGCCug-ACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 55179 | 0.67 | 0.902713 |
Target: 5'- uGCaUGACGacgGCUGCgGCucgGGACUGg -3' miRNA: 3'- -CGcACUGCa--CGACGgCGug-CCUGACg -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 55370 | 0.66 | 0.925228 |
Target: 5'- uGCgGUGACcaaGCUGCCguGCACGG--UGCg -3' miRNA: 3'- -CG-CACUGca-CGACGG--CGUGCCugACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 56523 | 0.66 | 0.935163 |
Target: 5'- cGCGcaGACGUGCccaGCUGUgucuuucaGCGGGCgGCu -3' miRNA: 3'- -CGCa-CUGCACGa--CGGCG--------UGCCUGaCG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 62462 | 0.71 | 0.725656 |
Target: 5'- -----cCGUGUUGCCGCucaucugaaGCGGACUGUg -3' miRNA: 3'- cgcacuGCACGACGGCG---------UGCCUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 70038 | 0.69 | 0.798525 |
Target: 5'- gGCGUGACG-GCgcagcGCCGCcACGaGcgcuuccaGCUGCg -3' miRNA: 3'- -CGCACUGCaCGa----CGGCG-UGC-C--------UGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 82090 | 0.69 | 0.780094 |
Target: 5'- cCGUGugGUGCcGaUCGCACcgaucuaagcgaaGGACUGUa -3' miRNA: 3'- cGCACugCACGaC-GGCGUG-------------CCUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 83269 | 0.67 | 0.883558 |
Target: 5'- cGCGUGAC-UGUgGCCGCuaACGG--UGCg -3' miRNA: 3'- -CGCACUGcACGaCGGCG--UGCCugACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 88080 | 0.66 | 0.930306 |
Target: 5'- cCG-GACG-GC-GCCGC--GGACUGCg -3' miRNA: 3'- cGCaCUGCaCGaCGGCGugCCUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 88276 | 0.68 | 0.86182 |
Target: 5'- aGCGUG-CGcucgGCUggGCgGCACGGaagccugGCUGCg -3' miRNA: 3'- -CGCACuGCa---CGA--CGgCGUGCC-------UGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 91156 | 0.69 | 0.81551 |
Target: 5'- gGC-UGuuGUGaCUGCCGCACcccaGGCUGCu -3' miRNA: 3'- -CGcACugCAC-GACGGCGUGc---CUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 92672 | 0.66 | 0.919929 |
Target: 5'- cUGUGACGUG-UGCCuu-CGGGgUGCg -3' miRNA: 3'- cGCACUGCACgACGGcguGCCUgACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 99560 | 0.74 | 0.55023 |
Target: 5'- gGCGUGgucucuGCGgccGCUGCCaGCACauGGACUGUa -3' miRNA: 3'- -CGCAC------UGCa--CGACGG-CGUG--CCUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 101774 | 1.12 | 0.002216 |
Target: 5'- uGCGUGACGUGCUGCCGCACGGACUGCc -3' miRNA: 3'- -CGCACUGCACGACGGCGUGCCUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 116738 | 0.69 | 0.787183 |
Target: 5'- cGCGUacuuccaaaaucuuGGCGUGCU-CgGCACGaACUGCa -3' miRNA: 3'- -CGCA--------------CUGCACGAcGgCGUGCcUGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 121018 | 0.68 | 0.831879 |
Target: 5'- -aGUGGCGUGCcGCUGCGCcGccaACUGUu -3' miRNA: 3'- cgCACUGCACGaCGGCGUGcC---UGACG- -5' |
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29186 | 5' | -57.3 | NC_006150.1 | + | 121975 | 0.67 | 0.908671 |
Target: 5'- uGgGUGGCGUGaUGCCGCcCuGAUcaUGCa -3' miRNA: 3'- -CgCACUGCACgACGGCGuGcCUG--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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