Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 312 | 0.69 | 0.807091 |
Target: 5'- cGCGgagGACG-GCUGCCcgggGUugGCGGuCUGCc -3' miRNA: 3'- -CGCa--CUGCaCGACGG----CG--UGCCuGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 70038 | 0.69 | 0.798525 |
Target: 5'- gGCGUGACG-GCgcagcGCCGCcACGaGcgcuuccaGCUGCg -3' miRNA: 3'- -CGCACUGCaCGa----CGGCG-UGC-C--------UGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 116738 | 0.69 | 0.787183 |
Target: 5'- cGCGUacuuccaaaaucuuGGCGUGCU-CgGCACGaACUGCa -3' miRNA: 3'- -CGCA--------------CUGCACGAcGgCGUGCcUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 82090 | 0.69 | 0.780094 |
Target: 5'- cCGUGugGUGCcGaUCGCACcgaucuaagcgaaGGACUGUa -3' miRNA: 3'- cGCACugCACGaC-GGCGUG-------------CCUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 62462 | 0.71 | 0.725656 |
Target: 5'- -----cCGUGUUGCCGCucaucugaaGCGGACUGUg -3' miRNA: 3'- cgcacuGCACGACGGCG---------UGCCUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 37481 | 0.73 | 0.589048 |
Target: 5'- uGUGUGcAUGUGCUGCUcuacgGCACGGugaUGCu -3' miRNA: 3'- -CGCAC-UGCACGACGG-----CGUGCCug-ACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 171820 | 0.73 | 0.589048 |
Target: 5'- uGC-UGGC-UGCUGUCGCucACGGGCUGUg -3' miRNA: 3'- -CGcACUGcACGACGGCG--UGCCUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 140530 | 0.74 | 0.55023 |
Target: 5'- cCGUG-UGUauugagaaaacaGCUGCUGUACGGACUGUg -3' miRNA: 3'- cGCACuGCA------------CGACGGCGUGCCUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 99560 | 0.74 | 0.55023 |
Target: 5'- gGCGUGgucucuGCGgccGCUGCCaGCACauGGACUGUa -3' miRNA: 3'- -CGCAC------UGCa--CGACGG-CGUG--CCUGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 32609 | 0.74 | 0.53682 |
Target: 5'- gGCGUGucguuggagaaccUGUGCUGgUGCACGGACaGCg -3' miRNA: 3'- -CGCACu------------GCACGACgGCGUGCCUGaCG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 220167 | 0.75 | 0.45743 |
Target: 5'- aGUGUGACcgauaGCUGCCGCagcuGCGG-CUGCg -3' miRNA: 3'- -CGCACUGca---CGACGGCG----UGCCuGACG- -5' |
|||||||
29186 | 5' | -57.3 | NC_006150.1 | + | 101774 | 1.12 | 0.002216 |
Target: 5'- uGCGUGACGUGCUGCCGCACGGACUGCc -3' miRNA: 3'- -CGCACUGCACGACGGCGUGCCUGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home