miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29187 3' -50 NC_006150.1 + 2233 0.72 0.937859
Target:  5'- gUUCAGCUGCAggcgagGGCcguGGCCGCcGAGGAGg -3'
miRNA:   3'- -AAGUUGGUGUa-----UUG---UUGGCG-CUCCUC- -5'
29187 3' -50 NC_006150.1 + 2921 0.67 0.997916
Target:  5'- -aCAACUgccguAUAUGACGGCgggcagaUGCGAGGAGg -3'
miRNA:   3'- aaGUUGG-----UGUAUUGUUG-------GCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 32479 0.7 0.975249
Target:  5'- -gCAgcACCAgGUAcCAGCCGCGAGGccAGg -3'
miRNA:   3'- aaGU--UGGUgUAUuGUUGGCGCUCC--UC- -5'
29187 3' -50 NC_006150.1 + 44227 0.71 0.966445
Target:  5'- -aCAACCAuUGUAGCucACCGCGAuGGGGa -3'
miRNA:   3'- aaGUUGGU-GUAUUGu-UGGCGCU-CCUC- -5'
29187 3' -50 NC_006150.1 + 53384 0.68 0.992733
Target:  5'- -aCGACCGCAUGAUA--CG-GAGGAGg -3'
miRNA:   3'- aaGUUGGUGUAUUGUugGCgCUCCUC- -5'
29187 3' -50 NC_006150.1 + 54520 0.69 0.990443
Target:  5'- --uGGgCACGgugAGCAAUgGCGAGGAGg -3'
miRNA:   3'- aagUUgGUGUa--UUGUUGgCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 69368 0.68 0.993701
Target:  5'- gUgAGCCGCA--GCAACCGUG-GGAu -3'
miRNA:   3'- aAgUUGGUGUauUGUUGGCGCuCCUc -5'
29187 3' -50 NC_006150.1 + 70096 0.68 0.994563
Target:  5'- gUCAugCACGgacUGGCGguggcGCUGCGuGGAGg -3'
miRNA:   3'- aAGUugGUGU---AUUGU-----UGGCGCuCCUC- -5'
29187 3' -50 NC_006150.1 + 77896 0.67 0.997111
Target:  5'- cUUgGACCGCuugcGCAACagacgGCGAGGGGg -3'
miRNA:   3'- -AAgUUGGUGuau-UGUUGg----CGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 88248 0.68 0.993701
Target:  5'- -gCGGCCGC---GCAGCCcugGCGGGGGGc -3'
miRNA:   3'- aaGUUGGUGuauUGUUGG---CGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 88314 0.66 0.998289
Target:  5'- -cCGACCAgGggAGCAggggaggguauGCCGgGGGGAGg -3'
miRNA:   3'- aaGUUGGUgUa-UUGU-----------UGGCgCUCCUC- -5'
29187 3' -50 NC_006150.1 + 92467 0.71 0.969594
Target:  5'- aUCAGaaaCAcCGUcACAGCgGCGAGGAGg -3'
miRNA:   3'- aAGUUg--GU-GUAuUGUUGgCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 101718 0.67 0.996001
Target:  5'- cUCGAUgACGUAGCAuaagacCCGCuGGGAGc -3'
miRNA:   3'- aAGUUGgUGUAUUGUu-----GGCGcUCCUC- -5'
29187 3' -50 NC_006150.1 + 102063 0.68 0.993701
Target:  5'- gUCGccGCCGCG--GCAACCGCcgcaaAGGAGa -3'
miRNA:   3'- aAGU--UGGUGUauUGUUGGCGc----UCCUC- -5'
29187 3' -50 NC_006150.1 + 103712 0.78 0.681532
Target:  5'- cUCGcggGCAUGACGGCCGCGGGGAGu -3'
miRNA:   3'- aAGUuggUGUAUUGUUGGCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 103994 1.08 0.017386
Target:  5'- gUUCAACCACAUAACAACCGCGAGGAGa -3'
miRNA:   3'- -AAGUUGGUGUAUUGUUGGCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 104338 0.67 0.996593
Target:  5'- -aCAGCCGCGcugggAACAGCCGCGGc--- -3'
miRNA:   3'- aaGUUGGUGUa----UUGUUGGCGCUccuc -5'
29187 3' -50 NC_006150.1 + 106257 0.75 0.826686
Target:  5'- cUCAGCUgacggcaACAgccGCGGCCGCGGGGGGa -3'
miRNA:   3'- aAGUUGG-------UGUau-UGUUGGCGCUCCUC- -5'
29187 3' -50 NC_006150.1 + 107689 0.68 0.993701
Target:  5'- gUCGGCCGCugggggAGCGACgGcCGGGGAc -3'
miRNA:   3'- aAGUUGGUGua----UUGUUGgC-GCUCCUc -5'
29187 3' -50 NC_006150.1 + 118777 0.67 0.997953
Target:  5'- -aCGGCCucCGggcAGCAGCUGCGAGGuGu -3'
miRNA:   3'- aaGUUGGu-GUa--UUGUUGGCGCUCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.