miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29187 5' -63.5 NC_006150.1 + 173813 0.66 0.680547
Target:  5'- --gUgCUCGCGGCCGcgUGUGCCuCGCa -3'
miRNA:   3'- uugAgGGGCGCCGGCa-GUACGG-GCGc -5'
29187 5' -63.5 NC_006150.1 + 183610 0.66 0.680547
Target:  5'- -uUUCUCCGCaGcCCGUUGccUGCCCGCu -3'
miRNA:   3'- uuGAGGGGCGcC-GGCAGU--ACGGGCGc -5'
29187 5' -63.5 NC_006150.1 + 103515 0.66 0.652034
Target:  5'- cACggUCCCGCuGCCGUCAccgGCCUGUc -3'
miRNA:   3'- uUGa-GGGGCGcCGGCAGUa--CGGGCGc -5'
29187 5' -63.5 NC_006150.1 + 88399 0.66 0.642493
Target:  5'- uGCUCCCUGCGGUgCG-CGgacgGCCgCGCu -3'
miRNA:   3'- uUGAGGGGCGCCG-GCaGUa---CGG-GCGc -5'
29187 5' -63.5 NC_006150.1 + 182510 0.66 0.632944
Target:  5'- -cCUCgCCGcCGGUCGcCGUGUCaCGCGg -3'
miRNA:   3'- uuGAGgGGC-GCCGGCaGUACGG-GCGC- -5'
29187 5' -63.5 NC_006150.1 + 114722 0.67 0.604321
Target:  5'- aGACUCCUCcgaggGCGGCCGagcCAUGUCuCGCc -3'
miRNA:   3'- -UUGAGGGG-----CGCCGGCa--GUACGG-GCGc -5'
29187 5' -63.5 NC_006150.1 + 126362 0.67 0.603369
Target:  5'- -cCUCCUCGCGGUCuUCGUacuugagGCCaCGCGa -3'
miRNA:   3'- uuGAGGGGCGCCGGcAGUA-------CGG-GCGC- -5'
29187 5' -63.5 NC_006150.1 + 88655 0.67 0.594808
Target:  5'- aGAC-CCagCGCGGCCGUCcgcGCaCCGCa -3'
miRNA:   3'- -UUGaGGg-GCGCCGGCAGua-CG-GGCGc -5'
29187 5' -63.5 NC_006150.1 + 145161 0.67 0.594808
Target:  5'- uGCgCCUCGCGGCCG----GUCCGCGa -3'
miRNA:   3'- uUGaGGGGCGCCGGCaguaCGGGCGC- -5'
29187 5' -63.5 NC_006150.1 + 45253 0.68 0.556113
Target:  5'- cACUCcuaCCCGaugcgauUGGCCGUgGUGUCCGCa -3'
miRNA:   3'- uUGAG---GGGC-------GCCGGCAgUACGGGCGc -5'
29187 5' -63.5 NC_006150.1 + 285 0.69 0.45775
Target:  5'- -cUUCCCCaGUcGCCGUCGUGCcgaggCCGCGg -3'
miRNA:   3'- uuGAGGGG-CGcCGGCAGUACG-----GGCGC- -5'
29187 5' -63.5 NC_006150.1 + 131494 0.7 0.449178
Target:  5'- cAACagCCUGUGGCUGUCAgcaGUCCGUGa -3'
miRNA:   3'- -UUGagGGGCGCCGGCAGUa--CGGGCGC- -5'
29187 5' -63.5 NC_006150.1 + 117533 0.7 0.42401
Target:  5'- uGGCUaUCCUGCGGCuCGUCA--CCCGCGu -3'
miRNA:   3'- -UUGA-GGGGCGCCG-GCAGUacGGGCGC- -5'
29187 5' -63.5 NC_006150.1 + 154826 0.71 0.399705
Target:  5'- uGGC-CCUCGCGGCCGcCGUGCUcauCGCu -3'
miRNA:   3'- -UUGaGGGGCGCCGGCaGUACGG---GCGc -5'
29187 5' -63.5 NC_006150.1 + 106510 0.72 0.311844
Target:  5'- ---cCCCCGCGGCCGcggcuguugccgUCAgcugaGCCCGCa -3'
miRNA:   3'- uugaGGGGCGCCGGC------------AGUa----CGGGCGc -5'
29187 5' -63.5 NC_006150.1 + 103960 1.06 0.001482
Target:  5'- aAACUCCCCGCGGCCGUCAUGCCCGCGa -3'
miRNA:   3'- -UUGAGGGGCGCCGGCAGUACGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.