Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 217191 | 0.69 | 0.707395 |
Target: 5'- aACAGaCCGCGGgaucUCAUcCCCAcgcuucaugacucguGCACCCAa -3' miRNA: 3'- -UGUC-GGCGCC----GGUAaGGGU---------------UGUGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 87838 | 0.69 | 0.693804 |
Target: 5'- cGCAGuCCGCGGCgCcgUCCgGGCAaucgCCAg -3' miRNA: 3'- -UGUC-GGCGCCG-GuaAGGgUUGUg---GGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 136351 | 0.69 | 0.693804 |
Target: 5'- cACAGCgGCGGCCucgauaUCUAGCGCCg- -3' miRNA: 3'- -UGUCGgCGCCGGuaa---GGGUUGUGGgu -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 116249 | 0.69 | 0.693804 |
Target: 5'- cGCAGCCGgcguggauaGGCCGcaaUUCCuCGACACCgAg -3' miRNA: 3'- -UGUCGGCg--------CCGGU---AAGG-GUUGUGGgU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 154590 | 0.7 | 0.664392 |
Target: 5'- gGCGGCCGCgagGGCCAgaacgugCCCggUGCCa- -3' miRNA: 3'- -UGUCGGCG---CCGGUaa-----GGGuuGUGGgu -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 116892 | 0.7 | 0.624867 |
Target: 5'- aACGGCUGCuGcGCCAUca-CAGCACCCAa -3' miRNA: 3'- -UGUCGGCG-C-CGGUAaggGUUGUGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 119118 | 0.7 | 0.624867 |
Target: 5'- cGCAGCCGaGGCCAgggCCGucugaaggaaguACACCCAu -3' miRNA: 3'- -UGUCGGCgCCGGUaagGGU------------UGUGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 90881 | 0.71 | 0.605107 |
Target: 5'- -gGGUCGCGGCCAUcuccgCCCugAGCACUCu -3' miRNA: 3'- ugUCGGCGCCGGUAa----GGG--UUGUGGGu -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 105191 | 0.71 | 0.573668 |
Target: 5'- -aGGCCGUGGCCucagccaaagCCCugcacACACCCAc -3' miRNA: 3'- ugUCGGCGCCGGuaa-------GGGu----UGUGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 207642 | 0.71 | 0.569762 |
Target: 5'- gGCGGCC-CGGCCAguacugcagaacgCCCAACACuuCCAa -3' miRNA: 3'- -UGUCGGcGCCGGUaa-----------GGGUUGUG--GGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 214721 | 0.72 | 0.527307 |
Target: 5'- cACGGCCGgGGCgCA-UCCCAGCgugAUCCAc -3' miRNA: 3'- -UGUCGGCgCCG-GUaAGGGUUG---UGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 116687 | 0.75 | 0.372998 |
Target: 5'- uGCGGUCGCccuucucgcguuaccGGCCGguugUCCCAACACCUu -3' miRNA: 3'- -UGUCGGCG---------------CCGGUa---AGGGUUGUGGGu -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 106506 | 0.76 | 0.339475 |
Target: 5'- cGCGGCCGCGGCUGUUgCCGucagcugaGCCCGc -3' miRNA: 3'- -UGUCGGCGCCGGUAAgGGUug------UGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 1897 | 0.76 | 0.338739 |
Target: 5'- uACGGUCGCGGCuacgguuaccgcgCAUUCCCAGguCCCGa -3' miRNA: 3'- -UGUCGGCGCCG-------------GUAAGGGUUguGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 104088 | 0.87 | 0.069143 |
Target: 5'- aAUGGCCGCGGCUGUUCCCAgcgcggcuguggcuGCACCCAa -3' miRNA: 3'- -UGUCGGCGCCGGUAAGGGU--------------UGUGGGU- -5' |
|||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 104324 | 1.08 | 0.002571 |
Target: 5'- aACAGCCGCGGCCAUUCCCAACACCCAg -3' miRNA: 3'- -UGUCGGCGCCGGUAAGGGUUGUGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home