miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29189 5' -50.5 NC_006150.1 + 112704 0.66 0.998654
Target:  5'- cGUACAUGUACACAacccaaCCGaCCGAc -3'
miRNA:   3'- aUAUGUACGUGUGUaagc--GGCaGGCU- -5'
29189 5' -50.5 NC_006150.1 + 173607 0.66 0.99838
Target:  5'- --gACAUGUacuGCGCAa--GCCGUCCa- -3'
miRNA:   3'- auaUGUACG---UGUGUaagCGGCAGGcu -5'
29189 5' -50.5 NC_006150.1 + 45739 0.66 0.997689
Target:  5'- --gACGUGCGCGaugguGUUCugaaGCUGUCCGGc -3'
miRNA:   3'- auaUGUACGUGUg----UAAG----CGGCAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 48016 0.66 0.99726
Target:  5'- --cGCGUGCACACAgu-GUCGUCaaaaaGAu -3'
miRNA:   3'- auaUGUACGUGUGUaagCGGCAGg----CU- -5'
29189 5' -50.5 NC_006150.1 + 65247 0.66 0.997119
Target:  5'- -uUGCAUGCuCAUGaggugacuaaaaacUUUGCCGUUCGAg -3'
miRNA:   3'- auAUGUACGuGUGU--------------AAGCGGCAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 117149 0.67 0.996768
Target:  5'- --gAUcUGCACGCcUUCGCgGuUCCGAg -3'
miRNA:   3'- auaUGuACGUGUGuAAGCGgC-AGGCU- -5'
29189 5' -50.5 NC_006150.1 + 1803 0.67 0.996204
Target:  5'- aGUGCAcGCACACAaaaaUCaCCGUCCu- -3'
miRNA:   3'- aUAUGUaCGUGUGUa---AGcGGCAGGcu -5'
29189 5' -50.5 NC_006150.1 + 119112 0.67 0.996204
Target:  5'- --gGCGUGCGCAgccgaggcCAgg-GCCGUCUGAa -3'
miRNA:   3'- auaUGUACGUGU--------GUaagCGGCAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 119725 0.67 0.995562
Target:  5'- ---gUAUGUGCACcgUCGCUgucacuGUCCGAu -3'
miRNA:   3'- auauGUACGUGUGuaAGCGG------CAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 215133 0.68 0.99309
Target:  5'- gGUGgAUGUACGCcggugucccuccGUacUCGCCGUUCGAc -3'
miRNA:   3'- aUAUgUACGUGUG------------UA--AGCGGCAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 86880 0.68 0.991835
Target:  5'- --cACAUGCGCACGcggauaaaccgUGCCGUCgGGc -3'
miRNA:   3'- auaUGUACGUGUGUaa---------GCGGCAGgCU- -5'
29189 5' -50.5 NC_006150.1 + 172758 0.68 0.989622
Target:  5'- --aACA-GCAUAC--UCGCCGUCCa- -3'
miRNA:   3'- auaUGUaCGUGUGuaAGCGGCAGGcu -5'
29189 5' -50.5 NC_006150.1 + 75895 0.68 0.989622
Target:  5'- ---cCGUGCGCAacucugUGCUGUCCGAg -3'
miRNA:   3'- auauGUACGUGUguaa--GCGGCAGGCU- -5'
29189 5' -50.5 NC_006150.1 + 117381 0.69 0.984925
Target:  5'- --gGCGUGCAgAUcaUCGCCGaCCGGc -3'
miRNA:   3'- auaUGUACGUgUGuaAGCGGCaGGCU- -5'
29189 5' -50.5 NC_006150.1 + 69161 0.69 0.978759
Target:  5'- cGUugGUGCACACGU--GCCG-CCGc -3'
miRNA:   3'- aUAugUACGUGUGUAagCGGCaGGCu -5'
29189 5' -50.5 NC_006150.1 + 37249 0.7 0.967866
Target:  5'- --cACAUGCACACAgccgUUGgUGUCCa- -3'
miRNA:   3'- auaUGUACGUGUGUa---AGCgGCAGGcu -5'
29189 5' -50.5 NC_006150.1 + 182219 0.71 0.961142
Target:  5'- aGUACAUGCAUACAcUUGCUGcCUGu -3'
miRNA:   3'- aUAUGUACGUGUGUaAGCGGCaGGCu -5'
29189 5' -50.5 NC_006150.1 + 105127 1.08 0.014966
Target:  5'- aUAUACAUGCACACAUUCGCCGUCCGAu -3'
miRNA:   3'- -AUAUGUACGUGUGUAAGCGGCAGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.