miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2919 3' -48.9 NC_001493.1 + 20486 0.66 0.998787
Target:  5'- uGCAgGCGGggGUUCcgggcaugagCCAugUGAUAGGc -3'
miRNA:   3'- -UGUgUGCUa-CAAGa---------GGUugACUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 106191 0.66 0.998222
Target:  5'- cCACACGAacgcgaCCAGCUGGCGGa -3'
miRNA:   3'- uGUGUGCUacaagaGGUUGACUGUCc -5'
2919 3' -48.9 NC_001493.1 + 50105 0.66 0.997864
Target:  5'- uCACACGGgagauuuguggGUUCgccaCCGACUGGauCAGGa -3'
miRNA:   3'- uGUGUGCUa----------CAAGa---GGUUGACU--GUCC- -5'
2919 3' -48.9 NC_001493.1 + 127531 0.66 0.997864
Target:  5'- uCGCGCGggGUUCgau-ACgGACAGGg -3'
miRNA:   3'- uGUGUGCuaCAAGagguUGaCUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 21662 0.67 0.996969
Target:  5'- gUAC-CGAgagGUUCcCCcGCUGAUAGGa -3'
miRNA:   3'- uGUGuGCUa--CAAGaGGuUGACUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 11976 0.67 0.996969
Target:  5'- cCGCGCGggGUUCgau-ACgGACAGGg -3'
miRNA:   3'- uGUGUGCuaCAAGagguUGaCUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 133325 0.67 0.996969
Target:  5'- gACAUcaugAUGAUGUUUUCCGACUu-UAGGu -3'
miRNA:   3'- -UGUG----UGCUACAAGAGGUUGAcuGUCC- -5'
2919 3' -48.9 NC_001493.1 + 17771 0.67 0.996969
Target:  5'- gACAUcaugAUGAUGUUUUCCGACUu-UAGGu -3'
miRNA:   3'- -UGUG----UGCUACAAGAGGUUGAcuGUCC- -5'
2919 3' -48.9 NC_001493.1 + 76554 0.67 0.99506
Target:  5'- -aACAUGGUGggucgUCgaCCcGCUGACGGGu -3'
miRNA:   3'- ugUGUGCUACa----AGa-GGuUGACUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 19626 0.67 0.99424
Target:  5'- gACugGCGAcGcUCUCCGAgUGuaguGCGGGg -3'
miRNA:   3'- -UGugUGCUaCaAGAGGUUgAC----UGUCC- -5'
2919 3' -48.9 NC_001493.1 + 92361 0.68 0.992274
Target:  5'- --cCGgGAUGUUUUCCucGACUGuACGGGg -3'
miRNA:   3'- uguGUgCUACAAGAGG--UUGAC-UGUCC- -5'
2919 3' -48.9 NC_001493.1 + 95776 0.7 0.970465
Target:  5'- ---aACGGUGUgaccaugguUCUCCAGC-GACGGGa -3'
miRNA:   3'- ugugUGCUACA---------AGAGGUUGaCUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 33640 0.7 0.970465
Target:  5'- gACAgGCGAuagagaUGUgggaccggaucgUCUCCAACagGACGGGg -3'
miRNA:   3'- -UGUgUGCU------ACA------------AGAGGUUGa-CUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 55607 0.7 0.963903
Target:  5'- uCACcggUGAUGUUCUCCAugUGcACGGa -3'
miRNA:   3'- uGUGu--GCUACAAGAGGUugAC-UGUCc -5'
2919 3' -48.9 NC_001493.1 + 48349 0.71 0.943216
Target:  5'- aACGCACGGUGgacgCgacgCCGGCgGACAGa -3'
miRNA:   3'- -UGUGUGCUACaa--Ga---GGUUGaCUGUCc -5'
2919 3' -48.9 NC_001493.1 + 125127 0.77 0.747913
Target:  5'- cCACGCGGUGcUCgCCGACggGACGGGa -3'
miRNA:   3'- uGUGUGCUACaAGaGGUUGa-CUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 9573 0.77 0.747913
Target:  5'- cCACGCGGUGcUCgCCGACggGACGGGa -3'
miRNA:   3'- uGUGUGCUACaAGaGGUUGa-CUGUCC- -5'
2919 3' -48.9 NC_001493.1 + 46102 1.11 0.010536
Target:  5'- cACACACGAUGUUCUCCAACUGACAGGc -3'
miRNA:   3'- -UGUGUGCUACAAGAGGUUGACUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.