miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2919 5' -50.8 NC_001493.1 + 4509 0.66 0.992167
Target:  5'- uGCCCgGgauaCGGUCGGGUCGUaacgGUg- -3'
miRNA:   3'- -CGGGgCa---GUCAGUCCAGUAaaa-CAga -5'
2919 5' -50.8 NC_001493.1 + 56223 0.66 0.992167
Target:  5'- cGCCCCcugugugaccugGUUGGUCAGGcUCAUgaucUGUUg -3'
miRNA:   3'- -CGGGG------------CAGUCAGUCC-AGUAaa--ACAGa -5'
2919 5' -50.8 NC_001493.1 + 71643 0.67 0.985633
Target:  5'- uGCCCCGagcacacugagaacgUCGGUgAGGaauUCGUUgUGUCg -3'
miRNA:   3'- -CGGGGC---------------AGUCAgUCC---AGUAAaACAGa -5'
2919 5' -50.8 NC_001493.1 + 80652 0.67 0.982987
Target:  5'- aGCCCCGUUcGUCGcGGcUCA---UGUCa -3'
miRNA:   3'- -CGGGGCAGuCAGU-CC-AGUaaaACAGa -5'
2919 5' -50.8 NC_001493.1 + 46100 0.67 0.982987
Target:  5'- cGCCUCGUggagAGUCAGGUCGggg-GUUc -3'
miRNA:   3'- -CGGGGCAg---UCAGUCCAGUaaaaCAGa -5'
2919 5' -50.8 NC_001493.1 + 120064 0.67 0.980882
Target:  5'- uGCCCgGgauaCGGUCGGGUCGUgaacgGUg- -3'
miRNA:   3'- -CGGGgCa---GUCAGUCCAGUAaaa--CAga -5'
2919 5' -50.8 NC_001493.1 + 19676 0.68 0.972264
Target:  5'- cGCCCCGcgccucuUCaagugggagcugauAGUCGGGgagUAUUUUGUCa -3'
miRNA:   3'- -CGGGGC-------AG--------------UCAGUCCa--GUAAAACAGa -5'
2919 5' -50.8 NC_001493.1 + 90515 0.68 0.960406
Target:  5'- cGCacaCCG-CGGUCGGGUCGag--GUCUg -3'
miRNA:   3'- -CGg--GGCaGUCAGUCCAGUaaaaCAGA- -5'
2919 5' -50.8 NC_001493.1 + 20596 0.71 0.890684
Target:  5'- gGCCcgCCGgguUCGGUCAcGGUCAggUUGUCg -3'
miRNA:   3'- -CGG--GGC---AGUCAGU-CCAGUaaAACAGa -5'
2919 5' -50.8 NC_001493.1 + 46065 1.11 0.006066
Target:  5'- gGCCCCGUCAGUCAGGUCAUUUUGUCUg -3'
miRNA:   3'- -CGGGGCAGUCAGUCCAGUAAAACAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.