miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29190 3' -56 NC_006150.1 + 209806 0.66 0.945278
Target:  5'- cGCUGAGCa-GCAcaAUGUUUCCCa--- -3'
miRNA:   3'- uCGACUCGggCGU--UGCGAAGGGauag -5'
29190 3' -56 NC_006150.1 + 131691 0.66 0.945278
Target:  5'- uAGCaauAGUCCGCGGCGCUUUUgUAUg -3'
miRNA:   3'- -UCGac-UCGGGCGUUGCGAAGGgAUAg -5'
29190 3' -56 NC_006150.1 + 190059 0.66 0.940783
Target:  5'- aGGCUGAuugugcuugGCCUGUuggcCGUgcUCCCUAUCg -3'
miRNA:   3'- -UCGACU---------CGGGCGuu--GCGa-AGGGAUAG- -5'
29190 3' -56 NC_006150.1 + 216361 0.66 0.940783
Target:  5'- cGCUauGCCUGCAACGag-CCCUGg- -3'
miRNA:   3'- uCGAcuCGGGCGUUGCgaaGGGAUag -5'
29190 3' -56 NC_006150.1 + 148683 0.66 0.920472
Target:  5'- cAGCUGGGUuuGgCGACGCcaggagcgCCCUGa- -3'
miRNA:   3'- -UCGACUCGggC-GUUGCGaa------GGGAUag -5'
29190 3' -56 NC_006150.1 + 114286 0.66 0.920472
Target:  5'- cGCUcAGCCCGCAcCGCgacCCCg--- -3'
miRNA:   3'- uCGAcUCGGGCGUuGCGaa-GGGauag -5'
29190 3' -56 NC_006150.1 + 180137 0.67 0.909513
Target:  5'- aGGCUGuauGGCCCGCGcgugaacauuacuucUGCgaaCCCUGUCa -3'
miRNA:   3'- -UCGAC---UCGGGCGUu--------------GCGaa-GGGAUAG- -5'
29190 3' -56 NC_006150.1 + 202855 0.67 0.902786
Target:  5'- aAGCgcggGAGCUgGCAGCGCgggCaCCUGg- -3'
miRNA:   3'- -UCGa---CUCGGgCGUUGCGaa-G-GGAUag -5'
29190 3' -56 NC_006150.1 + 102173 0.69 0.829603
Target:  5'- cGCUGAGCUCuucgcgcagGUAACGCUUUCUUAc- -3'
miRNA:   3'- uCGACUCGGG---------CGUUGCGAAGGGAUag -5'
29190 3' -56 NC_006150.1 + 72830 0.69 0.82121
Target:  5'- cAGCacaccGAcuCCCG-AACGCUUCCCUAUCu -3'
miRNA:   3'- -UCGa----CUc-GGGCgUUGCGAAGGGAUAG- -5'
29190 3' -56 NC_006150.1 + 34747 0.72 0.669754
Target:  5'- cGCUGAGagugCUGCAACGCU-CCCgcUCg -3'
miRNA:   3'- uCGACUCg---GGCGUUGCGAaGGGauAG- -5'
29190 3' -56 NC_006150.1 + 149219 0.72 0.63942
Target:  5'- gGGCUcGGcCCCGCAACGgUUCCCg--- -3'
miRNA:   3'- -UCGAcUC-GGGCGUUGCgAAGGGauag -5'
29190 3' -56 NC_006150.1 + 190907 0.73 0.59893
Target:  5'- gGGUUGGuGCCUGC-ACGCcUCCUUGUCa -3'
miRNA:   3'- -UCGACU-CGGGCGuUGCGaAGGGAUAG- -5'
29190 3' -56 NC_006150.1 + 88340 0.75 0.47198
Target:  5'- cAGCUGGGCCuCGCGACGCc-CCCa--- -3'
miRNA:   3'- -UCGACUCGG-GCGUUGCGaaGGGauag -5'
29190 3' -56 NC_006150.1 + 106485 1.1 0.003046
Target:  5'- cAGCUGAGCCCGCAACGCUUCCCUAUCg -3'
miRNA:   3'- -UCGACUCGGGCGUUGCGAAGGGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.