miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29190 5' -53.9 NC_006150.1 + 29484 0.66 0.987965
Target:  5'- cGGGcCCGGGGAGCGUa-CAUG-CCg -3'
miRNA:   3'- cUCUaGGCCCUUCGCAagGUACuGGg -5'
29190 5' -53.9 NC_006150.1 + 168798 0.66 0.986439
Target:  5'- ----aCCGGGAcGGUGUgcgagCCGUG-CCCg -3'
miRNA:   3'- cucuaGGCCCU-UCGCAa----GGUACuGGG- -5'
29190 5' -53.9 NC_006150.1 + 140581 0.66 0.982945
Target:  5'- -cGGUCCGcGGAucaGGaCGUUCgCGUG-CCCu -3'
miRNA:   3'- cuCUAGGC-CCU---UC-GCAAG-GUACuGGG- -5'
29190 5' -53.9 NC_006150.1 + 128609 0.66 0.980962
Target:  5'- uGGAUCCGcGAAGCGgauUCCccgcgcagcAUGGCCa -3'
miRNA:   3'- cUCUAGGCcCUUCGCa--AGG---------UACUGGg -5'
29190 5' -53.9 NC_006150.1 + 106221 0.66 0.978132
Target:  5'- cGGAUCUcacggaggccgauaGGGAAGCGUUgCG-GGCUCa -3'
miRNA:   3'- cUCUAGG--------------CCCUUCGCAAgGUaCUGGG- -5'
29190 5' -53.9 NC_006150.1 + 148302 0.67 0.973978
Target:  5'- cGGGuGUCUggGGGAGGUGa-CCGUGAUCCg -3'
miRNA:   3'- -CUC-UAGG--CCCUUCGCaaGGUACUGGG- -5'
29190 5' -53.9 NC_006150.1 + 32752 0.67 0.973978
Target:  5'- -uGAUuuGGacgauGAGGUGUUUCuUGACCCa -3'
miRNA:   3'- cuCUAggCC-----CUUCGCAAGGuACUGGG- -5'
29190 5' -53.9 NC_006150.1 + 120225 0.67 0.971282
Target:  5'- -uGAUCgGGGAcGCG-UCaugAUGGCCCu -3'
miRNA:   3'- cuCUAGgCCCUuCGCaAGg--UACUGGG- -5'
29190 5' -53.9 NC_006150.1 + 200683 0.67 0.971282
Target:  5'- cGAGGUCCGGGucGUucGUUCUGUGuuUCu -3'
miRNA:   3'- -CUCUAGGCCCuuCG--CAAGGUACugGG- -5'
29190 5' -53.9 NC_006150.1 + 106733 0.7 0.911037
Target:  5'- -----gCGGGAGcGCGUUCCGUGuAUCCg -3'
miRNA:   3'- cucuagGCCCUU-CGCAAGGUAC-UGGG- -5'
29190 5' -53.9 NC_006150.1 + 72780 0.7 0.911037
Target:  5'- cAGGUCCGGGAAGUGU----UGACgCa -3'
miRNA:   3'- cUCUAGGCCCUUCGCAagguACUGgG- -5'
29190 5' -53.9 NC_006150.1 + 131770 0.7 0.898155
Target:  5'- uGGAUcgCCGGGGaauagagGGUGUUCacaAUGGCCCu -3'
miRNA:   3'- cUCUA--GGCCCU-------UCGCAAGg--UACUGGG- -5'
29190 5' -53.9 NC_006150.1 + 67963 0.71 0.849071
Target:  5'- aGGAUCCuGGGuguucGGCGUUCCgGUGugCUg -3'
miRNA:   3'- cUCUAGG-CCCu----UCGCAAGG-UACugGG- -5'
29190 5' -53.9 NC_006150.1 + 106450 1.12 0.004316
Target:  5'- uGAGAUCCGGGAAGCGUUCCAUGACCCa -3'
miRNA:   3'- -CUCUAGGCCCUUCGCAAGGUACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.