Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29191 | 3' | -48.3 | NC_006150.1 | + | 107752 | 1.11 | 0.016103 |
Target: 5'- cACAAACAAACGGCGGUUCAAGUCCACa -3' miRNA: 3'- -UGUUUGUUUGCCGCCAAGUUCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 653 | 0.73 | 0.96496 |
Target: 5'- gACAGGgGGACGGCGGUggu-GUCUGCc -3' miRNA: 3'- -UGUUUgUUUGCCGCCAaguuCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 114657 | 0.72 | 0.983429 |
Target: 5'- gACAGACAAGCGGUu-UUCAuGUCCAg -3' miRNA: 3'- -UGUUUGUUUGCCGccAAGUuCAGGUg -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 135497 | 0.71 | 0.987007 |
Target: 5'- cCAGAU--GCGGCuGUUCAuccAGUCCACc -3' miRNA: 3'- uGUUUGuuUGCCGcCAAGU---UCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 82578 | 0.71 | 0.989958 |
Target: 5'- cCGAGCGuguuACuGGCGGagUCAAGUCCGu -3' miRNA: 3'- uGUUUGUu---UG-CCGCCa-AGUUCAGGUg -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 75247 | 0.71 | 0.989958 |
Target: 5'- ----uCGGGCGGCGGUUCAGcUCuCGCg -3' miRNA: 3'- uguuuGUUUGCCGCCAAGUUcAG-GUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 170513 | 0.7 | 0.994275 |
Target: 5'- cGCucACAuuCGGCGGUgagcaCGAG-CCACg -3' miRNA: 3'- -UGuuUGUuuGCCGCCAa----GUUCaGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 81975 | 0.69 | 0.995785 |
Target: 5'- aAUAuACAAACGGUGGagCAGGaUCuCACg -3' miRNA: 3'- -UGUuUGUUUGCCGCCaaGUUC-AG-GUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 47850 | 0.69 | 0.996953 |
Target: 5'- --uGACGAgGCGGuuGUUCAGGUCCGa -3' miRNA: 3'- uguUUGUU-UGCCgcCAAGUUCAGGUg -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 69411 | 0.69 | 0.997428 |
Target: 5'- -aAGACAAGCGGCGGcaCGuGUgCACc -3' miRNA: 3'- ugUUUGUUUGCCGCCaaGUuCAgGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 7036 | 0.69 | 0.997839 |
Target: 5'- gGCAuACAAuAUGGUGGUUUuGGUUCAUa -3' miRNA: 3'- -UGUuUGUU-UGCCGCCAAGuUCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 152686 | 0.68 | 0.998758 |
Target: 5'- --cAGCAGGacCGGUGGUUCAuuaGGUCUAUa -3' miRNA: 3'- uguUUGUUU--GCCGCCAAGU---UCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 199390 | 0.68 | 0.998758 |
Target: 5'- -uGAACaAGAUGGUGGgcacCAGGUUCACa -3' miRNA: 3'- ugUUUG-UUUGCCGCCaa--GUUCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 219580 | 0.68 | 0.998758 |
Target: 5'- cCGGGgAGAUGGCGGUUagauacugaCAcGUCCACc -3' miRNA: 3'- uGUUUgUUUGCCGCCAA---------GUuCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 115708 | 0.68 | 0.998979 |
Target: 5'- gGCGAGCGAGCcGCGGUUgGAcGcCCAa -3' miRNA: 3'- -UGUUUGUUUGcCGCCAAgUU-CaGGUg -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 24428 | 0.68 | 0.998979 |
Target: 5'- uAUAGAucCAGACGGggucaGGUUUAGGUCgCACa -3' miRNA: 3'- -UGUUU--GUUUGCCg----CCAAGUUCAG-GUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 113965 | 0.68 | 0.998979 |
Target: 5'- cCGAGCuGACGauacCGG-UCAAGUCCGCc -3' miRNA: 3'- uGUUUGuUUGCc---GCCaAGUUCAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 23767 | 0.68 | 0.998979 |
Target: 5'- -gGGAUGGAUGGCGGUcugccgUCAAucuccgaucgucGUCCACg -3' miRNA: 3'- ugUUUGUUUGCCGCCA------AGUU------------CAGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 88413 | 0.68 | 0.999165 |
Target: 5'- cGCGGACGGccGCGcugggucugccGCGGUUCcGGcUCCACg -3' miRNA: 3'- -UGUUUGUU--UGC-----------CGCCAAGuUC-AGGUG- -5' |
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29191 | 3' | -48.3 | NC_006150.1 | + | 46368 | 0.67 | 0.999262 |
Target: 5'- gACcAACAAGUGGCGGUgcucaucggaaaaCAAGUCCGg -3' miRNA: 3'- -UGuUUGUUUGCCGCCAa------------GUUCAGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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