miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29191 3' -48.3 NC_006150.1 + 24428 0.68 0.998979
Target:  5'- uAUAGAucCAGACGGggucaGGUUUAGGUCgCACa -3'
miRNA:   3'- -UGUUU--GUUUGCCg----CCAAGUUCAG-GUG- -5'
29191 3' -48.3 NC_006150.1 + 219580 0.68 0.998758
Target:  5'- cCGGGgAGAUGGCGGUUagauacugaCAcGUCCACc -3'
miRNA:   3'- uGUUUgUUUGCCGCCAA---------GUuCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 152686 0.68 0.998758
Target:  5'- --cAGCAGGacCGGUGGUUCAuuaGGUCUAUa -3'
miRNA:   3'- uguUUGUUU--GCCGCCAAGU---UCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 199390 0.68 0.998758
Target:  5'- -uGAACaAGAUGGUGGgcacCAGGUUCACa -3'
miRNA:   3'- ugUUUG-UUUGCCGCCaa--GUUCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 7036 0.69 0.997839
Target:  5'- gGCAuACAAuAUGGUGGUUUuGGUUCAUa -3'
miRNA:   3'- -UGUuUGUU-UGCCGCCAAGuUCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 69411 0.69 0.997428
Target:  5'- -aAGACAAGCGGCGGcaCGuGUgCACc -3'
miRNA:   3'- ugUUUGUUUGCCGCCaaGUuCAgGUG- -5'
29191 3' -48.3 NC_006150.1 + 47850 0.69 0.996953
Target:  5'- --uGACGAgGCGGuuGUUCAGGUCCGa -3'
miRNA:   3'- uguUUGUU-UGCCgcCAAGUUCAGGUg -5'
29191 3' -48.3 NC_006150.1 + 81975 0.69 0.995785
Target:  5'- aAUAuACAAACGGUGGagCAGGaUCuCACg -3'
miRNA:   3'- -UGUuUGUUUGCCGCCaaGUUC-AG-GUG- -5'
29191 3' -48.3 NC_006150.1 + 170513 0.7 0.994275
Target:  5'- cGCucACAuuCGGCGGUgagcaCGAG-CCACg -3'
miRNA:   3'- -UGuuUGUuuGCCGCCAa----GUUCaGGUG- -5'
29191 3' -48.3 NC_006150.1 + 82578 0.71 0.989958
Target:  5'- cCGAGCGuguuACuGGCGGagUCAAGUCCGu -3'
miRNA:   3'- uGUUUGUu---UG-CCGCCa-AGUUCAGGUg -5'
29191 3' -48.3 NC_006150.1 + 75247 0.71 0.989958
Target:  5'- ----uCGGGCGGCGGUUCAGcUCuCGCg -3'
miRNA:   3'- uguuuGUUUGCCGCCAAGUUcAG-GUG- -5'
29191 3' -48.3 NC_006150.1 + 135497 0.71 0.987007
Target:  5'- cCAGAU--GCGGCuGUUCAuccAGUCCACc -3'
miRNA:   3'- uGUUUGuuUGCCGcCAAGU---UCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 114657 0.72 0.983429
Target:  5'- gACAGACAAGCGGUu-UUCAuGUCCAg -3'
miRNA:   3'- -UGUUUGUUUGCCGccAAGUuCAGGUg -5'
29191 3' -48.3 NC_006150.1 + 653 0.73 0.96496
Target:  5'- gACAGGgGGACGGCGGUggu-GUCUGCc -3'
miRNA:   3'- -UGUUUgUUUGCCGCCAaguuCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 107752 1.11 0.016103
Target:  5'- cACAAACAAACGGCGGUUCAAGUCCACa -3'
miRNA:   3'- -UGUUUGUUUGCCGCCAAGUUCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.