Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29192 | 3' | -55.7 | NC_006150.1 | + | 218710 | 0.73 | 0.662056 |
Target: 5'- cCCUGCGCCUUGUUUGU--GCAugAUg -3' miRNA: 3'- -GGACGCGGAGCAGACGugCGUugUGu -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 1787 | 0.66 | 0.956522 |
Target: 5'- gCUgGUGCCUCugggGagUGCACGCA-CACAa -3' miRNA: 3'- gGA-CGCGGAG----CagACGUGCGUuGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 171220 | 0.66 | 0.952704 |
Target: 5'- gUCUGCGCgggUGUCUGUgGCGCGGCGg- -3' miRNA: 3'- -GGACGCGga-GCAGACG-UGCGUUGUgu -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 195017 | 0.66 | 0.948666 |
Target: 5'- uUUGCGCCgauaCaUCUGCAUGUugucaAACACAg -3' miRNA: 3'- gGACGCGGa---GcAGACGUGCG-----UUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 126064 | 0.66 | 0.944406 |
Target: 5'- gUCUGCGCCUucaCGUCcucugGUACGCA-CAa- -3' miRNA: 3'- -GGACGCGGA---GCAGa----CGUGCGUuGUgu -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 1944 | 0.67 | 0.939922 |
Target: 5'- aUCU-CGCCcCGUCUGgACaCAACACAu -3' miRNA: 3'- -GGAcGCGGaGCAGACgUGcGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 108989 | 0.67 | 0.939922 |
Target: 5'- --gGCGCCgguuggCGUagUUGCACGCGuccguGCGCAg -3' miRNA: 3'- ggaCGCGGa-----GCA--GACGUGCGU-----UGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 63693 | 0.68 | 0.90823 |
Target: 5'- gCUGCGCgC-CGUgUuCGCGCAAUACAg -3' miRNA: 3'- gGACGCG-GaGCAgAcGUGCGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 56285 | 0.68 | 0.90823 |
Target: 5'- gCUGgGCa-CGUCUGCGCGCugaACGg -3' miRNA: 3'- gGACgCGgaGCAGACGUGCGuugUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 125576 | 0.69 | 0.866301 |
Target: 5'- aCCUGCGUCUgGUCUGgAacgaggagcguuuuCGCGAUugGg -3' miRNA: 3'- -GGACGCGGAgCAGACgU--------------GCGUUGugU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 183893 | 0.69 | 0.861127 |
Target: 5'- aCUGCGCCUCcacCUGCGC-CGGC-CAa -3' miRNA: 3'- gGACGCGGAGca-GACGUGcGUUGuGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 114270 | 0.7 | 0.837881 |
Target: 5'- uCCguaGUGUUUUGUCgGCGCGCGGCAUg -3' miRNA: 3'- -GGa--CGCGGAGCAGaCGUGCGUUGUGu -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 40843 | 0.7 | 0.804417 |
Target: 5'- cCCUGUGUCUgGaUCUGCAUcacggGCAAUGCAu -3' miRNA: 3'- -GGACGCGGAgC-AGACGUG-----CGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 74263 | 0.71 | 0.777726 |
Target: 5'- -aUGCGUgUCGcaaaugCUGCugGCGGCGCGc -3' miRNA: 3'- ggACGCGgAGCa-----GACGugCGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 157333 | 0.7 | 0.804417 |
Target: 5'- aCUGaGCCUggggUGUCUGCACGUGcCACAa -3' miRNA: 3'- gGACgCGGA----GCAGACGUGCGUuGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 68250 | 0.71 | 0.749914 |
Target: 5'- gUUGcCGCCUaggaUGUCUGCuacguggaugGCGCAGCACAc -3' miRNA: 3'- gGAC-GCGGA----GCAGACG----------UGCGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 187770 | 0.72 | 0.72121 |
Target: 5'- --cGCGCCUCaGUCuuccUGCACGUGACAUc -3' miRNA: 3'- ggaCGCGGAG-CAG----ACGUGCGUUGUGu -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 217624 | 0.72 | 0.72121 |
Target: 5'- aCCUGUGCaUUUGcCUGCGC-CAGCGCAg -3' miRNA: 3'- -GGACGCG-GAGCaGACGUGcGUUGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 13142 | 0.75 | 0.566321 |
Target: 5'- --gGCGCCUUGUCUGUuauuaaggugccugaGCGCAcACACAa -3' miRNA: 3'- ggaCGCGGAGCAGACG---------------UGCGU-UGUGU- -5' |
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29192 | 3' | -55.7 | NC_006150.1 | + | 52663 | 0.66 | 0.963516 |
Target: 5'- uCCaGUGCCaUCGUCaGCAgugUGCGGCAUg -3' miRNA: 3'- -GGaCGCGG-AGCAGaCGU---GCGUUGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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