miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29192 5' -53.8 NC_006150.1 + 113070 0.66 0.982717
Target:  5'- uGCGgCG-UGCCGUGCAguGACGAcuUGAc -3'
miRNA:   3'- cUGCaGCuACGGCACGU--CUGCU--ACUu -5'
29192 5' -53.8 NC_006150.1 + 214301 0.66 0.973515
Target:  5'- uGGgGUUGAUGCaacaGUGacugaGGGCGAUGGAu -3'
miRNA:   3'- -CUgCAGCUACGg---CACg----UCUGCUACUU- -5'
29192 5' -53.8 NC_006150.1 + 117475 0.66 0.973515
Target:  5'- aGGCGUCGAcguUGCCGUGCAccagcaagucGACuaGGUaGAAg -3'
miRNA:   3'- -CUGCAGCU---ACGGCACGU----------CUG--CUA-CUU- -5'
29192 5' -53.8 NC_006150.1 + 107132 0.67 0.964589
Target:  5'- -cCGUCGAcGauaCGgcgGCAGAUGAUGAAa -3'
miRNA:   3'- cuGCAGCUaCg--GCa--CGUCUGCUACUU- -5'
29192 5' -53.8 NC_006150.1 + 111462 0.67 0.957581
Target:  5'- gGugGaCGAUGCCGccgaGGACGAUGGu -3'
miRNA:   3'- -CugCaGCUACGGCacg-UCUGCUACUu -5'
29192 5' -53.8 NC_006150.1 + 128814 0.68 0.949679
Target:  5'- cACGUCGuuauGUGCgGUggaGCGGAUGGUGGAa -3'
miRNA:   3'- cUGCAGC----UACGgCA---CGUCUGCUACUU- -5'
29192 5' -53.8 NC_006150.1 + 152940 0.68 0.949679
Target:  5'- uGCGggCGAaGUCGUGUuaaAGACGAUGAGc -3'
miRNA:   3'- cUGCa-GCUaCGGCACG---UCUGCUACUU- -5'
29192 5' -53.8 NC_006150.1 + 181254 0.69 0.902501
Target:  5'- -uUGUCGugGUGCCGagGCGGACGcgGAGg -3'
miRNA:   3'- cuGCAGC--UACGGCa-CGUCUGCuaCUU- -5'
29192 5' -53.8 NC_006150.1 + 135556 0.71 0.844937
Target:  5'- gGACGUCGAgGCgGUGCcAGGCGAg--- -3'
miRNA:   3'- -CUGCAGCUaCGgCACG-UCUGCUacuu -5'
29192 5' -53.8 NC_006150.1 + 180451 0.72 0.79355
Target:  5'- cGACGUCGucguaGCCGUGC-GACGcgGGGg -3'
miRNA:   3'- -CUGCAGCua---CGGCACGuCUGCuaCUU- -5'
29192 5' -53.8 NC_006150.1 + 29495 0.74 0.697281
Target:  5'- aGCGUacAUGCCGaGCGGACGAUGAGc -3'
miRNA:   3'- cUGCAgcUACGGCaCGUCUGCUACUU- -5'
29192 5' -53.8 NC_006150.1 + 109406 1.05 0.010558
Target:  5'- gGACGUCGAUGCCGUGCAGACGAUGAAc -3'
miRNA:   3'- -CUGCAGCUACGGCACGUCUGCUACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.