Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29194 | 5' | -48.5 | NC_006150.1 | + | 4497 | 0.66 | 0.999665 |
Target: 5'- ---uGCACuuuucguagguUCGAUAACAGU-CACAUGa -3' miRNA: 3'- uuuuCGUG-----------AGCUGUUGUCAgGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 35316 | 0.7 | 0.986999 |
Target: 5'- aAAAGGCGCcuugcggCGACAACGGUUgGCGUu -3' miRNA: 3'- -UUUUCGUGa------GCUGUUGUCAGgUGUAc -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 40833 | 0.68 | 0.998234 |
Target: 5'- gAAAGGCGCuucuUCGAcCAGCAGUaaCGCAUGu -3' miRNA: 3'- -UUUUCGUG----AGCU-GUUGUCAg-GUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 51813 | 0.66 | 0.999665 |
Target: 5'- cAAGAGCACcCG-C-GCAGUUCACAUa -3' miRNA: 3'- -UUUUCGUGaGCuGuUGUCAGGUGUAc -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 52589 | 0.66 | 0.999578 |
Target: 5'- cAAAGUACgcCGGCAuACAGUCgACAUa -3' miRNA: 3'- uUUUCGUGa-GCUGU-UGUCAGgUGUAc -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 72338 | 0.73 | 0.944411 |
Target: 5'- -cAGGUACUUGACGAgGGUgCGCGUGc -3' miRNA: 3'- uuUUCGUGAGCUGUUgUCAgGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 102385 | 0.66 | 0.999735 |
Target: 5'- ---uGCAgCUUGACcGCGGUCCgaacGCGUGa -3' miRNA: 3'- uuuuCGU-GAGCUGuUGUCAGG----UGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 111073 | 0.68 | 0.998536 |
Target: 5'- -cGAGUGCUuuugcgacUGACAGCugccugcagGGUCCACAUGa -3' miRNA: 3'- uuUUCGUGA--------GCUGUUG---------UCAGGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 111305 | 1.08 | 0.022172 |
Target: 5'- cAAAAGCACUCGACAACAGUCCACAUGg -3' miRNA: 3'- -UUUUCGUGAGCUGUUGUCAGGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 111704 | 0.66 | 0.999665 |
Target: 5'- ---cGUcCUCGGCGGCAucGUCCAcCAUGa -3' miRNA: 3'- uuuuCGuGAGCUGUUGU--CAGGU-GUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 114110 | 0.69 | 0.996457 |
Target: 5'- uGGAGGuCGCUgGGCugaaAGUCCACGUGc -3' miRNA: 3'- -UUUUC-GUGAgCUGuug-UCAGGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 115568 | 0.67 | 0.999473 |
Target: 5'- aGGAGGUACUCGuCGAUGGUCUuaaACAa- -3' miRNA: 3'- -UUUUCGUGAGCuGUUGUCAGG---UGUac -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 124293 | 0.66 | 0.999729 |
Target: 5'- cGAGGCcuaugacGCUCGGCAACGcccgcgucagguGUCUACAUa -3' miRNA: 3'- uUUUCG-------UGAGCUGUUGU------------CAGGUGUAc -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 137478 | 0.74 | 0.934546 |
Target: 5'- ----aCACUCGACcACGGUCCGCAc- -3' miRNA: 3'- uuuucGUGAGCUGuUGUCAGGUGUac -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 137831 | 0.68 | 0.997473 |
Target: 5'- gAGAGGCGCggcaGGCGGCGGaaCGCGUGa -3' miRNA: 3'- -UUUUCGUGag--CUGUUGUCagGUGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 149214 | 0.68 | 0.997882 |
Target: 5'- aGGAGGgGCUCGgccccGCAACGGUUCcCGUGg -3' miRNA: 3'- -UUUUCgUGAGC-----UGUUGUCAGGuGUAC- -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 188400 | 0.65 | 0.999834 |
Target: 5'- aAGAAGCGCUCGAggcagguggUAGCAGUacaucuuaggagaCCGCGg- -3' miRNA: 3'- -UUUUCGUGAGCU---------GUUGUCA-------------GGUGUac -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 191167 | 0.66 | 0.999578 |
Target: 5'- uAGGAGCACUCaGACAACAgguuGUUCAgGg- -3' miRNA: 3'- -UUUUCGUGAG-CUGUUGU----CAGGUgUac -5' |
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29194 | 5' | -48.5 | NC_006150.1 | + | 201438 | 0.68 | 0.998234 |
Target: 5'- ---cGCACUCGucCAACAGaauuauUCCACAg- -3' miRNA: 3'- uuuuCGUGAGCu-GUUGUC------AGGUGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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