miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 3' -59.2 NC_006150.1 + 80409 0.66 0.848006
Target:  5'- aAUCGUgaUCGGUGGCAaagUCGUCaCGCa- -3'
miRNA:   3'- -UAGCAggAGCCGCCGU---AGCAG-GUGgu -5'
29195 3' -59.2 NC_006150.1 + 71250 0.66 0.840287
Target:  5'- uUCGaUCCcgUCuGGCGGCGUUGcgacaCCACCAc -3'
miRNA:   3'- uAGC-AGG--AG-CCGCCGUAGCa----GGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 183114 0.67 0.794047
Target:  5'- gGUCGUCCUCggGGUGGCgaaaGUCGgggccgguggucgagUCUGCCAu -3'
miRNA:   3'- -UAGCAGGAG--CCGCCG----UAGC---------------AGGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 1975 0.68 0.754707
Target:  5'- uUCcUCCUCGGCGGCcacggccUCG-CCugCAg -3'
miRNA:   3'- uAGcAGGAGCCGCCGu------AGCaGGugGU- -5'
29195 3' -59.2 NC_006150.1 + 202788 0.68 0.753788
Target:  5'- uAUCGUCCUCGuGCacGUcgucaaaGUCGUCCugCAu -3'
miRNA:   3'- -UAGCAGGAGC-CGc-CG-------UAGCAGGugGU- -5'
29195 3' -59.2 NC_006150.1 + 47686 0.68 0.745474
Target:  5'- cAUCGgCgaCGGCGGCcgCGUCCuCCu -3'
miRNA:   3'- -UAGCaGgaGCCGCCGuaGCAGGuGGu -5'
29195 3' -59.2 NC_006150.1 + 217686 0.69 0.698104
Target:  5'- -gCGUCCcCGGCGGUAcagcgCGUguucCCGCCAg -3'
miRNA:   3'- uaGCAGGaGCCGCCGUa----GCA----GGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 117014 0.69 0.688446
Target:  5'- cUCGUCgUCGGUGGCcugauaGUCGUCgACgAa -3'
miRNA:   3'- uAGCAGgAGCCGCCG------UAGCAGgUGgU- -5'
29195 3' -59.2 NC_006150.1 + 139634 0.7 0.649461
Target:  5'- -cCGUaCCccaGGCGGCGacCGUCCGCCAg -3'
miRNA:   3'- uaGCA-GGag-CCGCCGUa-GCAGGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 107724 0.71 0.552054
Target:  5'- -aUGUCCUUcacgGGCGGCGUUGgaCCGCCAu -3'
miRNA:   3'- uaGCAGGAG----CCGCCGUAGCa-GGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 149874 0.73 0.486463
Target:  5'- -aCG-CCUCGGCGGCAccagUCGucuaugcaUCCGCCGa -3'
miRNA:   3'- uaGCaGGAGCCGCCGU----AGC--------AGGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 116817 0.74 0.416374
Target:  5'- -aCGUCCUCguuGGUGGCGaucUCGUCgACCAg -3'
miRNA:   3'- uaGCAGGAG---CCGCCGU---AGCAGgUGGU- -5'
29195 3' -59.2 NC_006150.1 + 133647 0.75 0.38372
Target:  5'- -cCGcCCUCGGUuuccacGCGUCGUCCGCCAc -3'
miRNA:   3'- uaGCaGGAGCCGc-----CGUAGCAGGUGGU- -5'
29195 3' -59.2 NC_006150.1 + 111707 1.06 0.003494
Target:  5'- cAUCGUCCUCGGCGGCAUCGUCCACCAu -3'
miRNA:   3'- -UAGCAGGAGCCGCCGUAGCAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.