miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 5' -52 NC_006150.1 + 113358 0.67 0.991655
Target:  5'- gGCAgGCAGACGUCGagaccucCGCC-GGGCu -3'
miRNA:   3'- gCGU-CGUUUGUAGCgca----GUGGuUCCG- -5'
29195 5' -52 NC_006150.1 + 202868 0.67 0.990479
Target:  5'- gGCAGCGcgGGCAccuggaaCGCGggCGCCucGGGCg -3'
miRNA:   3'- gCGUCGU--UUGUa------GCGCa-GUGGu-UCCG- -5'
29195 5' -52 NC_006150.1 + 114166 0.67 0.990479
Target:  5'- gCGCGGCAGcgGUCGCuUCACau-GGUg -3'
miRNA:   3'- -GCGUCGUUugUAGCGcAGUGguuCCG- -5'
29195 5' -52 NC_006150.1 + 32697 0.67 0.990479
Target:  5'- aGCgugGGCAAcaGCGUCGC-UCGCaCGAGGg -3'
miRNA:   3'- gCG---UCGUU--UGUAGCGcAGUG-GUUCCg -5'
29195 5' -52 NC_006150.1 + 175138 0.67 0.990479
Target:  5'- uCGCGcGCAAACAcauacCGaUGUCGCaGAGGCa -3'
miRNA:   3'- -GCGU-CGUUUGUa----GC-GCAGUGgUUCCG- -5'
29195 5' -52 NC_006150.1 + 135771 0.67 0.990479
Target:  5'- cCGCGGCGGcacCAUgGCGaccuCCAAGGUg -3'
miRNA:   3'- -GCGUCGUUu--GUAgCGCagu-GGUUCCG- -5'
29195 5' -52 NC_006150.1 + 194886 0.67 0.990479
Target:  5'- uGCGGCAGugGagGCGUauaaguaACCAcGGGUa -3'
miRNA:   3'- gCGUCGUUugUagCGCAg------UGGU-UCCG- -5'
29195 5' -52 NC_006150.1 + 68219 0.67 0.989844
Target:  5'- gCGCAGCAcaccggaacgccgAACAcccaggauccuaaCGCGUaauCCAGGGCg -3'
miRNA:   3'- -GCGUCGU-------------UUGUa------------GCGCAgu-GGUUCCG- -5'
29195 5' -52 NC_006150.1 + 41369 0.67 0.989177
Target:  5'- gCGUAGCGAAUGUCGaucuccacCGUCuGCCGAGcGUu -3'
miRNA:   3'- -GCGUCGUUUGUAGC--------GCAG-UGGUUC-CG- -5'
29195 5' -52 NC_006150.1 + 31617 0.67 0.989177
Target:  5'- uGuCGGC-AGCAUC-UG-CACCAAGGCu -3'
miRNA:   3'- gC-GUCGuUUGUAGcGCaGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 55215 0.67 0.98774
Target:  5'- aGCAGaGGGCGguggCG-GUCACCAauucAGGCg -3'
miRNA:   3'- gCGUCgUUUGUa---GCgCAGUGGU----UCCG- -5'
29195 5' -52 NC_006150.1 + 219762 0.67 0.98774
Target:  5'- gGCGGCAgGACcUgGCGUgGCCGcGGGUg -3'
miRNA:   3'- gCGUCGU-UUGuAgCGCAgUGGU-UCCG- -5'
29195 5' -52 NC_006150.1 + 92450 0.67 0.98774
Target:  5'- aGCGGCGAggagGCGgugacCGUGUCGCC--GGCc -3'
miRNA:   3'- gCGUCGUU----UGUa----GCGCAGUGGuuCCG- -5'
29195 5' -52 NC_006150.1 + 132128 0.67 0.98616
Target:  5'- gGCGGCGAACAUUag--UACCGAGGa -3'
miRNA:   3'- gCGUCGUUUGUAGcgcaGUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 145001 0.67 0.98616
Target:  5'- aGCAGCAcGGCcagacuccucgAUCGCGaaccggcgcUCACCGGGGa -3'
miRNA:   3'- gCGUCGU-UUG-----------UAGCGC---------AGUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 3108 0.67 0.98616
Target:  5'- aGCAGC---CAgUGCGUCGCCGAGa- -3'
miRNA:   3'- gCGUCGuuuGUaGCGCAGUGGUUCcg -5'
29195 5' -52 NC_006150.1 + 83592 0.67 0.985993
Target:  5'- uGgGGgAGACAcccaauuUCGCGUCACC--GGCu -3'
miRNA:   3'- gCgUCgUUUGU-------AGCGCAGUGGuuCCG- -5'
29195 5' -52 NC_006150.1 + 36039 0.68 0.984428
Target:  5'- aGCAaaGUGAGC-UCgGCGUCcuccaGCCGAGGCu -3'
miRNA:   3'- gCGU--CGUUUGuAG-CGCAG-----UGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 3185 0.68 0.984428
Target:  5'- -cCAGCAAuuCAUCGCGUucCACagcgcuggaaCAAGGCa -3'
miRNA:   3'- gcGUCGUUu-GUAGCGCA--GUG----------GUUCCG- -5'
29195 5' -52 NC_006150.1 + 122398 0.68 0.982537
Target:  5'- -cCAGCGg----CGCGUCACCGuGGCu -3'
miRNA:   3'- gcGUCGUuuguaGCGCAGUGGUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.