Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 119748 | 0.66 | 0.924285 |
|
Target: 5'- gUCCGAUUGU-GGGCGCgcgcuggcuuuCACCGUCa-- -3' miRNA: 3'- -AGGCUGACAgCCUGCG-----------GUGGUAGguu -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 125717 | 0.66 | 0.918896 |
|
Target: 5'- cCCGAaagGUCGG-CGCgACCGUCa-- -3' miRNA: 3'- aGGCUga-CAGCCuGCGgUGGUAGguu -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 152784 | 0.68 | 0.821159 |
|
Target: 5'- gCCGugUGUauGAUuccaCCGCCAUCCAAa -3' miRNA: 3'- aGGCugACAgcCUGc---GGUGGUAGGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 70034 | 0.68 | 0.812767 |
|
Target: 5'- gUCCGGCgUGaCGGcgcaGCGCCGCCAcgagcgcuUCCAGc -3' miRNA: 3'- -AGGCUG-ACaGCC----UGCGGUGGU--------AGGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 216083 | 0.68 | 0.812767 |
|
Target: 5'- -aUGGCUGUgGGGCGUCAgCUGUCCGGu -3' miRNA: 3'- agGCUGACAgCCUGCGGU-GGUAGGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 90697 | 0.69 | 0.759446 |
|
Target: 5'- aUCauGCUGUCGG-CGCCACCGgugUCAAu -3' miRNA: 3'- -AGgcUGACAGCCuGCGGUGGUa--GGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 180830 | 0.7 | 0.740735 |
|
Target: 5'- aCCGGCUG-CGGGCGCCAauaaCuguugCCAAc -3' miRNA: 3'- aGGCUGACaGCCUGCGGUg---Gua---GGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 169315 | 0.7 | 0.721667 |
|
Target: 5'- uUCUGGCUa-CGGAaacaGUCACCAUCCAAa -3' miRNA: 3'- -AGGCUGAcaGCCUg---CGGUGGUAGGUU- -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 94667 | 0.72 | 0.593562 |
|
Target: 5'- cUCCGACUcUCGGGCuacaGCCACCAgaCCAc -3' miRNA: 3'- -AGGCUGAcAGCCUG----CGGUGGUa-GGUu -5' |
|||||||
| 29196 | 5' | -57.4 | NC_006150.1 | + | 113873 | 1.06 | 0.004518 |
|
Target: 5'- gUCCGACUGUCGGACGCCACCAUCCAAa -3' miRNA: 3'- -AGGCUGACAGCCUGCGGUGGUAGGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home