miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29197 3' -55.2 NC_006150.1 + 70308 0.66 0.969338
Target:  5'- cGCGCUcgGCGCaGCUGgaagcgcuCGUGgcggCGCUGCGc -3'
miRNA:   3'- -CGCGA--CGUGcUGAC--------GCACa---GCGAUGU- -5'
29197 3' -55.2 NC_006150.1 + 3006 0.66 0.969338
Target:  5'- aGCGCagGCACGGC-GCGUuGgaaGCUugGa -3'
miRNA:   3'- -CGCGa-CGUGCUGaCGCA-Cag-CGAugU- -5'
29197 3' -55.2 NC_006150.1 + 210433 0.66 0.969338
Target:  5'- cGCGCcGCAUGACUGCGaa-UGCUu-- -3'
miRNA:   3'- -CGCGaCGUGCUGACGCacaGCGAugu -5'
29197 3' -55.2 NC_006150.1 + 29430 0.66 0.969045
Target:  5'- -aGCgGUugGAucuggauCUGC-UGUCGCUGCAg -3'
miRNA:   3'- cgCGaCGugCU-------GACGcACAGCGAUGU- -5'
29197 3' -55.2 NC_006150.1 + 88958 0.66 0.966315
Target:  5'- aGCGCUGagaACGACgGCGauUGUgGUaGCAg -3'
miRNA:   3'- -CGCGACg--UGCUGaCGC--ACAgCGaUGU- -5'
29197 3' -55.2 NC_006150.1 + 154176 0.66 0.963088
Target:  5'- gGUGCUGguUGcaGCUGUgcugGUGUCGCUGg- -3'
miRNA:   3'- -CGCGACguGC--UGACG----CACAGCGAUgu -5'
29197 3' -55.2 NC_006150.1 + 216744 0.66 0.956002
Target:  5'- cGCGaaaccCACGACaagUG-GUGUCGCUGCAc -3'
miRNA:   3'- -CGCgac--GUGCUG---ACgCACAGCGAUGU- -5'
29197 3' -55.2 NC_006150.1 + 171812 0.67 0.952134
Target:  5'- uGCGUcauUGCugG-CUGC-UGUCGCUcACGg -3'
miRNA:   3'- -CGCG---ACGugCuGACGcACAGCGA-UGU- -5'
29197 3' -55.2 NC_006150.1 + 217198 0.67 0.943728
Target:  5'- gGUGCUgGCACcACUGC-UGUUGCUAg- -3'
miRNA:   3'- -CGCGA-CGUGcUGACGcACAGCGAUgu -5'
29197 3' -55.2 NC_006150.1 + 113497 0.67 0.943728
Target:  5'- gGUGCUGCGCG-CUGCGgaagGUcaCGUUGa- -3'
miRNA:   3'- -CGCGACGUGCuGACGCa---CA--GCGAUgu -5'
29197 3' -55.2 NC_006150.1 + 181616 0.67 0.939185
Target:  5'- aCGCUGCACGGCaagguaGCG-GUgCGCUGg- -3'
miRNA:   3'- cGCGACGUGCUGa-----CGCaCA-GCGAUgu -5'
29197 3' -55.2 NC_006150.1 + 90768 0.67 0.939185
Target:  5'- uUGCUGCGgaGGCUGC-UGUUGCgGCAu -3'
miRNA:   3'- cGCGACGUg-CUGACGcACAGCGaUGU- -5'
29197 3' -55.2 NC_006150.1 + 80677 0.67 0.934414
Target:  5'- -aGCU-CACGAUUGCGUGuUUGCgugACGa -3'
miRNA:   3'- cgCGAcGUGCUGACGCAC-AGCGa--UGU- -5'
29197 3' -55.2 NC_006150.1 + 183521 0.67 0.934414
Target:  5'- uGCGCUGCG-GAuuCUGCGUGggcucCGgUGCGg -3'
miRNA:   3'- -CGCGACGUgCU--GACGCACa----GCgAUGU- -5'
29197 3' -55.2 NC_006150.1 + 154289 0.69 0.859446
Target:  5'- uCGUUGCugGgGCUGUuguuGUGUUGCUACu -3'
miRNA:   3'- cGCGACGugC-UGACG----CACAGCGAUGu -5'
29197 3' -55.2 NC_006150.1 + 114157 0.7 0.835953
Target:  5'- uGUGCccugGCGCGGCaGCG-GUCGCUucACAu -3'
miRNA:   3'- -CGCGa---CGUGCUGaCGCaCAGCGA--UGU- -5'
29197 3' -55.2 NC_006150.1 + 124382 0.7 0.818538
Target:  5'- cGCGCUGUugGcggaacuaaaucgGCUggGCGUGUCGCa--- -3'
miRNA:   3'- -CGCGACGugC-------------UGA--CGCACAGCGaugu -5'
29197 3' -55.2 NC_006150.1 + 121009 0.71 0.799521
Target:  5'- cCGCUGCGCcgccaacuguuuuuGuCUGCGcUGUUGCUGCGc -3'
miRNA:   3'- cGCGACGUG--------------CuGACGC-ACAGCGAUGU- -5'
29197 3' -55.2 NC_006150.1 + 114036 1.1 0.004278
Target:  5'- uGCGCUGCACGACUGCGUGUCGCUACAc -3'
miRNA:   3'- -CGCGACGUGCUGACGCACAGCGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.