Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29197 | 5' | -43.8 | NC_006150.1 | + | 27931 | 0.68 | 0.999997 |
Target: 5'- ---aUCGGCGGCGuuaagauacagAGAUUAGCAACu- -3' miRNA: 3'- aaacAGUUGCUGU-----------UCUAAUCGUUGug -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 70545 | 0.68 | 0.999997 |
Target: 5'- cUUGUCggUGACaAAGAguuGCAggGCGCa -3' miRNA: 3'- aAACAGuuGCUG-UUCUaauCGU--UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 110683 | 0.69 | 0.99999 |
Target: 5'- --gGUCGGCGgguACGAGGUgucugAGCGGCAg -3' miRNA: 3'- aaaCAGUUGC---UGUUCUAa----UCGUUGUg -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 207921 | 0.69 | 0.99999 |
Target: 5'- --aGgcgUAACGAUAGGAUUGGCGuaACAUc -3' miRNA: 3'- aaaCa--GUUGCUGUUCUAAUCGU--UGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 36871 | 0.7 | 0.999951 |
Target: 5'- --aGUCAGCGACAAacucgaaAGCGGCAUg -3' miRNA: 3'- aaaCAGUUGCUGUUcuaa---UCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 174636 | 0.7 | 0.999933 |
Target: 5'- ---cUCGACGGCAGauuGAUgAGCAGCGCc -3' miRNA: 3'- aaacAGUUGCUGUU---CUAaUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 70153 | 0.7 | 0.999933 |
Target: 5'- ---cUCAACGACGAGGUUcGCGcuCACa -3' miRNA: 3'- aaacAGUUGCUGUUCUAAuCGUu-GUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 217363 | 0.7 | 0.999933 |
Target: 5'- --gGUUAuUGGCAAGA--AGCGACACg -3' miRNA: 3'- aaaCAGUuGCUGUUCUaaUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 19408 | 0.71 | 0.999911 |
Target: 5'- --aGUCAGCaACAAGAc--GCGGCACa -3' miRNA: 3'- aaaCAGUUGcUGUUCUaauCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 88362 | 0.71 | 0.999801 |
Target: 5'- gUUGUCGAgGGgGAGGg-GGCGGCGCa -3' miRNA: 3'- aAACAGUUgCUgUUCUaaUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 32927 | 0.74 | 0.996823 |
Target: 5'- --gGUCGGCGGCGGGGaugGGCAGuCGCa -3' miRNA: 3'- aaaCAGUUGCUGUUCUaa-UCGUU-GUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 113759 | 0.78 | 0.962262 |
Target: 5'- cUUGUCGuUGACAAGGUuaaauccggcaggugUAGCGACACg -3' miRNA: 3'- aAACAGUuGCUGUUCUA---------------AUCGUUGUG- -5' |
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29197 | 5' | -43.8 | NC_006150.1 | + | 113994 | 1.08 | 0.065221 |
Target: 5'- cUUUGUCAACGACAAGAUUAGCAACACc -3' miRNA: 3'- -AAACAGUUGCUGUUCUAAUCGUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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