Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29198 | 3' | -52.1 | NC_006150.1 | + | 32338 | 0.7 | 0.953826 |
Target: 5'- -gGGugGUCUUCCgCUGUCCgu-GCaCCa -3' miRNA: 3'- agUCugUAGAAGG-GAUAGGaguCG-GG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 47743 | 0.68 | 0.982842 |
Target: 5'- cCAGACAUUgcugCCUcggCCUCAGCUUc -3' miRNA: 3'- aGUCUGUAGaa--GGGauaGGAGUCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 54659 | 0.71 | 0.925815 |
Target: 5'- -gGGACcacCUUUCCUAUCCgcuGGCCCa -3' miRNA: 3'- agUCUGua-GAAGGGAUAGGag-UCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 54909 | 0.67 | 0.985408 |
Target: 5'- cUCGGACAUCaucucggaauccagUCCCgagCCgCAGCCg -3' miRNA: 3'- -AGUCUGUAGa-------------AGGGauaGGaGUCGGg -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 83018 | 0.7 | 0.940889 |
Target: 5'- gUCGGAC-UUUUCCCUgccuaAUCUUCAGCa- -3' miRNA: 3'- -AGUCUGuAGAAGGGA-----UAGGAGUCGgg -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 105990 | 0.71 | 0.93108 |
Target: 5'- gCGGACcUCcaUCCCaGUCCUCucuacAGCCCg -3' miRNA: 3'- aGUCUGuAGa-AGGGaUAGGAG-----UCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 109144 | 0.69 | 0.961298 |
Target: 5'- aCAGGCAUCca-CCUGUUCcgCGGCCg -3' miRNA: 3'- aGUCUGUAGaagGGAUAGGa-GUCGGg -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 114225 | 1.14 | 0.005002 |
Target: 5'- cUCAGACAUCUUCCCUAUCCUCAGCCCg -3' miRNA: 3'- -AGUCUGUAGAAGGGAUAGGAGUCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 117859 | 0.66 | 0.996018 |
Target: 5'- -gAGGCGUCUgg-CUAUCC-CGGCCa -3' miRNA: 3'- agUCUGUAGAaggGAUAGGaGUCGGg -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 119364 | 0.73 | 0.860229 |
Target: 5'- uUCAGACGg---CCCUggCCUCGGCUg -3' miRNA: 3'- -AGUCUGUagaaGGGAuaGGAGUCGGg -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 131458 | 0.74 | 0.792788 |
Target: 5'- cCAGGCAUCUcCUCgg-CCUCAGgCCCc -3' miRNA: 3'- aGUCUGUAGAaGGGauaGGAGUC-GGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 138049 | 0.7 | 0.945436 |
Target: 5'- cUCAG-CGcccugagccauUCUUCCCgcUCCUCcaaaGGCCCa -3' miRNA: 3'- -AGUCuGU-----------AGAAGGGauAGGAG----UCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 149005 | 0.69 | 0.967888 |
Target: 5'- cCAG-CAUCagcUCCCg--CCUCGGUCCc -3' miRNA: 3'- aGUCuGUAGa--AGGGauaGGAGUCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 158314 | 0.69 | 0.964701 |
Target: 5'- gUCuGuauCAUCUgUCCCUucaucugucUCCUCAGCCUg -3' miRNA: 3'- -AGuCu--GUAGA-AGGGAu--------AGGAGUCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 164049 | 0.7 | 0.936104 |
Target: 5'- cUCAGACGUCUgucaagcuggCCCUucagacUCCUC-GUCCg -3' miRNA: 3'- -AGUCUGUAGAa---------GGGAu-----AGGAGuCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 168934 | 0.7 | 0.949327 |
Target: 5'- gUCGGuCAUCUgggCCgCUGUCCuggcaagUCGGUCCg -3' miRNA: 3'- -AGUCuGUAGAa--GG-GAUAGG-------AGUCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 171358 | 0.67 | 0.984707 |
Target: 5'- -aAGACcUCUUCCCUAUCaccauGGaCCCg -3' miRNA: 3'- agUCUGuAGAAGGGAUAGgag--UC-GGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 171653 | 0.68 | 0.97364 |
Target: 5'- gCAGGCAUacaaUUCUgUGUCCUCAGaaCUCa -3' miRNA: 3'- aGUCUGUAg---AAGGgAUAGGAGUC--GGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 198035 | 0.66 | 0.995364 |
Target: 5'- aCGGGCGccaugCUgaUCCCUAUUCUUuGCCUc -3' miRNA: 3'- aGUCUGUa----GA--AGGGAUAGGAGuCGGG- -5' |
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29198 | 3' | -52.1 | NC_006150.1 | + | 201038 | 0.67 | 0.986413 |
Target: 5'- -gAGAgugaGUCaUCUCUGUCCUCAGauaCCCa -3' miRNA: 3'- agUCUg---UAGaAGGGAUAGGAGUC---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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