miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2920 3' -57 NC_001493.1 + 53413 0.66 0.858288
Target:  5'- -aUCC-CGACCAucGCACGgaguUCGGCCu -3'
miRNA:   3'- ggGGGuGCUGGU--CGUGUagu-AGCCGG- -5'
2920 3' -57 NC_001493.1 + 11028 0.66 0.858288
Target:  5'- gCUUCACG-CCAGC-CGUCAUCccgagGGCUc -3'
miRNA:   3'- gGGGGUGCuGGUCGuGUAGUAG-----CCGG- -5'
2920 3' -57 NC_001493.1 + 65172 0.66 0.858288
Target:  5'- gCCCgCGCGAaCGGCACG-CcgCGGUUg -3'
miRNA:   3'- -GGGgGUGCUgGUCGUGUaGuaGCCGG- -5'
2920 3' -57 NC_001493.1 + 101288 0.66 0.855992
Target:  5'- aCCCCCGCGAUCGucuguGCGCucuugccaguguauAUgGUCggGGCCc -3'
miRNA:   3'- -GGGGGUGCUGGU-----CGUG--------------UAgUAG--CCGG- -5'
2920 3' -57 NC_001493.1 + 64583 0.66 0.850565
Target:  5'- gCgCCCGUGGCgAGUACAUC-UCGGUg -3'
miRNA:   3'- -GgGGGUGCUGgUCGUGUAGuAGCCGg -5'
2920 3' -57 NC_001493.1 + 56724 0.66 0.850565
Target:  5'- --aCCAUGuCCAGCGCGgcacUCGUCGcGUCg -3'
miRNA:   3'- gggGGUGCuGGUCGUGU----AGUAGC-CGG- -5'
2920 3' -57 NC_001493.1 + 31100 0.66 0.850565
Target:  5'- gCCgC-CGACCGcGC-CGUCAccgCGGCCg -3'
miRNA:   3'- gGGgGuGCUGGU-CGuGUAGUa--GCCGG- -5'
2920 3' -57 NC_001493.1 + 70532 0.66 0.850565
Target:  5'- aUCCCCGCccgGGCCuuGCACAgcuugaucUCGUCGcCCa -3'
miRNA:   3'- -GGGGGUG---CUGGu-CGUGU--------AGUAGCcGG- -5'
2920 3' -57 NC_001493.1 + 30340 0.66 0.850565
Target:  5'- uCCCCC-CGACCAGgGCcccgaguUCGUCGa-- -3'
miRNA:   3'- -GGGGGuGCUGGUCgUGu------AGUAGCcgg -5'
2920 3' -57 NC_001493.1 + 13052 0.66 0.849782
Target:  5'- gUCCCCGgGGucaaCAGCugguggagcgaguGCGUC-UCGGCCa -3'
miRNA:   3'- -GGGGGUgCUg---GUCG-------------UGUAGuAGCCGG- -5'
2920 3' -57 NC_001493.1 + 107963 0.66 0.849782
Target:  5'- aCCCCCcguguccGCGGUCAGCcuCAUCG-CGGCg -3'
miRNA:   3'- -GGGGG-------UGCUGGUCGu-GUAGUaGCCGg -5'
2920 3' -57 NC_001493.1 + 128606 0.66 0.849782
Target:  5'- gUCCCCGgGGucaaCAGCugguggagcgaguGCGUC-UCGGCCa -3'
miRNA:   3'- -GGGGGUgCUg---GUCG-------------UGUAGuAGCCGG- -5'
2920 3' -57 NC_001493.1 + 25123 0.67 0.842649
Target:  5'- cCCCCCGCGAgCAG-ACA--GUCGcCCa -3'
miRNA:   3'- -GGGGGUGCUgGUCgUGUagUAGCcGG- -5'
2920 3' -57 NC_001493.1 + 46034 0.67 0.842649
Target:  5'- gCCUCGCGcaGCCcGCACAUC-UC-GCCg -3'
miRNA:   3'- gGGGGUGC--UGGuCGUGUAGuAGcCGG- -5'
2920 3' -57 NC_001493.1 + 88033 0.67 0.834545
Target:  5'- aCCCCugGACCuGC-CccCcgCGGCg -3'
miRNA:   3'- gGGGGugCUGGuCGuGuaGuaGCCGg -5'
2920 3' -57 NC_001493.1 + 63005 0.67 0.833725
Target:  5'- gCCCacgggaGCGACCGGCACcgugaccGUCGcgaCGGCg -3'
miRNA:   3'- gGGGg-----UGCUGGUCGUG-------UAGUa--GCCGg -5'
2920 3' -57 NC_001493.1 + 74097 0.67 0.833725
Target:  5'- aUCCCCACGGu--GUACAUCGaaaauccugggauUCGGCa -3'
miRNA:   3'- -GGGGGUGCUgguCGUGUAGU-------------AGCCGg -5'
2920 3' -57 NC_001493.1 + 119587 0.67 0.832079
Target:  5'- aCCCCGgacgGACCGGCucaugucccgaaauAUAUCAUCgauGGCCc -3'
miRNA:   3'- gGGGGUg---CUGGUCG--------------UGUAGUAG---CCGG- -5'
2920 3' -57 NC_001493.1 + 4033 0.67 0.832079
Target:  5'- aCCCCGgacgGACCGGCucaugucccgaaauAUAUCAUCgauGGCCc -3'
miRNA:   3'- gGGGGUg---CUGGUCG--------------UGUAGUAG---CCGG- -5'
2920 3' -57 NC_001493.1 + 2161 0.67 0.826261
Target:  5'- -gUCCAUGGCCAGCcucACuagGUUGGCCa -3'
miRNA:   3'- ggGGGUGCUGGUCG---UGuagUAGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.