Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2920 | 5' | -55.4 | NC_001493.1 | + | 46949 | 1.14 | 0.00158 |
Target: 5'- cGGGAUCUCGAUCAGCAUCUGGCGGGGg -3' miRNA: 3'- -CCCUAGAGCUAGUCGUAGACCGCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 52182 | 0.75 | 0.485756 |
Target: 5'- cGGGGUggUGuguGUCAGCAUUcacaUGGCGGGGg -3' miRNA: 3'- -CCCUAgaGC---UAGUCGUAG----ACCGCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 37506 | 0.7 | 0.769241 |
Target: 5'- uGGGcCUCGAUCGgcugcugguacuugcGCAUgUGcGCGGGGa -3' miRNA: 3'- cCCUaGAGCUAGU---------------CGUAgAC-CGCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 86562 | 0.69 | 0.811137 |
Target: 5'- -cGAUCUCGGUCAGUAugaggucucUCUcGGCcGGGu -3' miRNA: 3'- ccCUAGAGCUAGUCGU---------AGA-CCGcCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 105165 | 0.69 | 0.811137 |
Target: 5'- cGGGAcCUUGAUUuuuGUGUCUGGUGGa- -3' miRNA: 3'- -CCCUaGAGCUAGu--CGUAGACCGCCcc -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 30513 | 0.68 | 0.819818 |
Target: 5'- uGGGAaaucUCUCGAcgaacUCGGgGccCUGGuCGGGGg -3' miRNA: 3'- -CCCU----AGAGCU-----AGUCgUa-GACC-GCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 57792 | 0.68 | 0.828329 |
Target: 5'- cGGGAUCaccCGGuUCAGUAUCgagggGGCGuuGGGu -3' miRNA: 3'- -CCCUAGa--GCU-AGUCGUAGa----CCGC--CCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 88008 | 0.68 | 0.83666 |
Target: 5'- uGGAgga-GAUCAGCGggUGGCGGuGGg -3' miRNA: 3'- cCCUagagCUAGUCGUagACCGCC-CC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 131451 | 0.67 | 0.882504 |
Target: 5'- aGGGAcucCUgGAUCAGCcgUUccaGGuCGGGGa -3' miRNA: 3'- -CCCUa--GAgCUAGUCGuaGA---CC-GCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 15897 | 0.67 | 0.882504 |
Target: 5'- aGGGAcucCUgGAUCAGCcgUUccaGGuCGGGGa -3' miRNA: 3'- -CCCUa--GAgCUAGUCGuaGA---CC-GCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 94698 | 0.67 | 0.896062 |
Target: 5'- uGGGAUCUCGA--AGUAUauccCGGGGa -3' miRNA: 3'- -CCCUAGAGCUagUCGUAgaccGCCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 112826 | 0.66 | 0.911114 |
Target: 5'- gGGGAUCUCGggC-GCAggcucgacgcgaacuUCUgGGUGaGGGa -3' miRNA: 3'- -CCCUAGAGCuaGuCGU---------------AGA-CCGC-CCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 90818 | 0.66 | 0.914665 |
Target: 5'- cGGGAggucugCUCGAaCGGCcUCUcgacucggagccGGCGGGc -3' miRNA: 3'- -CCCUa-----GAGCUaGUCGuAGA------------CCGCCCc -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 58068 | 0.66 | 0.914665 |
Target: 5'- cGGAUCgu-AUCGGCAUCgGGCaugugagcgucGGGGu -3' miRNA: 3'- cCCUAGagcUAGUCGUAGaCCG-----------CCCC- -5' |
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2920 | 5' | -55.4 | NC_001493.1 | + | 62328 | 0.66 | 0.931132 |
Target: 5'- cGGGggCU--AUCAGUggguUCUccGGCGGGGg -3' miRNA: 3'- -CCCuaGAgcUAGUCGu---AGA--CCGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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