miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29200 3' -51 NC_006150.1 + 219852 0.66 0.998208
Target:  5'- cGUgCUG-CCUUGAUAGG-CGGCgaGCCg -3'
miRNA:   3'- cUAgGACuGGAACUGUCUaGUCG--UGG- -5'
29200 3' -51 NC_006150.1 + 113750 0.66 0.99648
Target:  5'- cGAUUCaacgUGACCUUccGCAGcgcgCAGCACCa -3'
miRNA:   3'- -CUAGG----ACUGGAAc-UGUCua--GUCGUGG- -5'
29200 3' -51 NC_006150.1 + 84686 0.67 0.995201
Target:  5'- --aCCUGgacACCaaagcgGACgagGGGUCAGCGCCg -3'
miRNA:   3'- cuaGGAC---UGGaa----CUG---UCUAGUCGUGG- -5'
29200 3' -51 NC_006150.1 + 1007 0.67 0.993567
Target:  5'- --gCCUGACgCUaGGCGGcgCAGCgagcGCCa -3'
miRNA:   3'- cuaGGACUG-GAaCUGUCuaGUCG----UGG- -5'
29200 3' -51 NC_006150.1 + 118515 0.67 0.993567
Target:  5'- cGGUgCUGACCaUGACAccucgCAGCugCu -3'
miRNA:   3'- -CUAgGACUGGaACUGUcua--GUCGugG- -5'
29200 3' -51 NC_006150.1 + 219247 0.67 0.992598
Target:  5'- -uUCCUGACCggcuucugcUGGCAGAgcaagagcuUgGGCAUCg -3'
miRNA:   3'- cuAGGACUGGa--------ACUGUCU---------AgUCGUGG- -5'
29200 3' -51 NC_006150.1 + 182210 0.68 0.990311
Target:  5'- --aCCUGAUC--GACAGGUUGGCugCc -3'
miRNA:   3'- cuaGGACUGGaaCUGUCUAGUCGugG- -5'
29200 3' -51 NC_006150.1 + 156217 0.68 0.987504
Target:  5'- --cCCUGACCUUGuacAUAGAUgaUAGCAUa -3'
miRNA:   3'- cuaGGACUGGAAC---UGUCUA--GUCGUGg -5'
29200 3' -51 NC_006150.1 + 150215 0.69 0.977757
Target:  5'- --cCCUG-CCcgGGCAGGUC-GCGCCg -3'
miRNA:   3'- cuaGGACuGGaaCUGUCUAGuCGUGG- -5'
29200 3' -51 NC_006150.1 + 29135 0.69 0.977757
Target:  5'- uGGUUgUGACC-UGACAuGAUCGGaACCg -3'
miRNA:   3'- -CUAGgACUGGaACUGU-CUAGUCgUGG- -5'
29200 3' -51 NC_006150.1 + 142990 0.7 0.966611
Target:  5'- --cCCUGACuCUUGGCGauGGUCAuCGCCg -3'
miRNA:   3'- cuaGGACUG-GAACUGU--CUAGUcGUGG- -5'
29200 3' -51 NC_006150.1 + 204164 0.7 0.966611
Target:  5'- cAUUCUGAUCcUGGCGGcUgAGCACCu -3'
miRNA:   3'- cUAGGACUGGaACUGUCuAgUCGUGG- -5'
29200 3' -51 NC_006150.1 + 102284 0.7 0.959764
Target:  5'- cGUCCUGACaCggcGGCGGAUCGacuucGCACUg -3'
miRNA:   3'- cUAGGACUG-Gaa-CUGUCUAGU-----CGUGG- -5'
29200 3' -51 NC_006150.1 + 162228 0.71 0.938593
Target:  5'- cGGUCUUGGCUgugUGcCAGGUCAGCcauauuguuuugGCCg -3'
miRNA:   3'- -CUAGGACUGGa--ACuGUCUAGUCG------------UGG- -5'
29200 3' -51 NC_006150.1 + 117900 0.73 0.896111
Target:  5'- aAUCgUGACCggcaacaucccgGACGGAUUGGCGCCc -3'
miRNA:   3'- cUAGgACUGGaa----------CUGUCUAGUCGUGG- -5'
29200 3' -51 NC_006150.1 + 132909 0.74 0.866195
Target:  5'- uGGUCUUGGCCUgcugauUGACccuaccucuggccuGAUCGGCGCCu -3'
miRNA:   3'- -CUAGGACUGGA------ACUGu-------------CUAGUCGUGG- -5'
29200 3' -51 NC_006150.1 + 70032 0.74 0.855354
Target:  5'- gGGUCC-GGCg-UGACGGcgCAGCGCCg -3'
miRNA:   3'- -CUAGGaCUGgaACUGUCuaGUCGUGG- -5'
29200 3' -51 NC_006150.1 + 114436 1.14 0.006098
Target:  5'- cGAUCCUGACCUUGACAGAUCAGCACCa -3'
miRNA:   3'- -CUAGGACUGGAACUGUCUAGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.