miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29200 5' -61.7 NC_006150.1 + 107538 0.66 0.74573
Target:  5'- gGACCGUcaguugagcagGCCcgagaaGCGCCGGcGGCGCAa- -3'
miRNA:   3'- gCUGGCGa----------CGG------CGCGGUC-CCGUGUau -5'
29200 5' -61.7 NC_006150.1 + 72513 0.66 0.702555
Target:  5'- uGGCCGCUGCCGagGCCGccgaacaacuggucGGUACAUu -3'
miRNA:   3'- gCUGGCGACGGCg-CGGUc-------------CCGUGUAu -5'
29200 5' -61.7 NC_006150.1 + 90586 0.66 0.698736
Target:  5'- uGA-UGCUGCUGCGCCcccgaAGGGCAa--- -3'
miRNA:   3'- gCUgGCGACGGCGCGG-----UCCCGUguau -5'
29200 5' -61.7 NC_006150.1 + 220161 0.67 0.689155
Target:  5'- gGGCUGCUGCuCGCGCCAacuGGUuugACAc- -3'
miRNA:   3'- gCUGGCGACG-GCGCGGUc--CCG---UGUau -5'
29200 5' -61.7 NC_006150.1 + 308 0.67 0.660183
Target:  5'- aGGCCGCggaggacgGCUGC-CCGGGGUugGc- -3'
miRNA:   3'- gCUGGCGa-------CGGCGcGGUCCCGugUau -5'
29200 5' -61.7 NC_006150.1 + 202519 0.68 0.611583
Target:  5'- -uGCCGCUGaaGC-CUGGGGUACAUAu -3'
miRNA:   3'- gcUGGCGACggCGcGGUCCCGUGUAU- -5'
29200 5' -61.7 NC_006150.1 + 1971 0.69 0.572909
Target:  5'- aGGCgGuCUGCgGUGCCGGuGCGCAUAu -3'
miRNA:   3'- gCUGgC-GACGgCGCGGUCcCGUGUAU- -5'
29200 5' -61.7 NC_006150.1 + 92763 0.69 0.544279
Target:  5'- gCGACCGagaacGCCGUGCuCAgcGGGCACGg- -3'
miRNA:   3'- -GCUGGCga---CGGCGCG-GU--CCCGUGUau -5'
29200 5' -61.7 NC_006150.1 + 147602 0.7 0.497695
Target:  5'- uCGGCCGCggcuuuUGCCGUGCCccuccaGGGGUugAg- -3'
miRNA:   3'- -GCUGGCG------ACGGCGCGG------UCCCGugUau -5'
29200 5' -61.7 NC_006150.1 + 207291 0.7 0.461753
Target:  5'- uGACCGCgauaaCGCGCCAuGGCACGc- -3'
miRNA:   3'- gCUGGCGacg--GCGCGGUcCCGUGUau -5'
29200 5' -61.7 NC_006150.1 + 119113 0.71 0.427227
Target:  5'- gCGugCGCaGCCGagGCCAGGGC-CGUc -3'
miRNA:   3'- -GCugGCGaCGGCg-CGGUCCCGuGUAu -5'
29200 5' -61.7 NC_006150.1 + 152166 0.72 0.405622
Target:  5'- gGugCGgUGCCGCGaucgacggauaugaCAGGGCACAa- -3'
miRNA:   3'- gCugGCgACGGCGCg-------------GUCCCGUGUau -5'
29200 5' -61.7 NC_006150.1 + 114402 1.06 0.001891
Target:  5'- gCGACCGCUGCCGCGCCAGGGCACAUAu -3'
miRNA:   3'- -GCUGGCGACGGCGCGGUCCCGUGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.