Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29201 | 5' | -57.6 | NC_006150.1 | + | 472 | 0.68 | 0.822061 |
Target: 5'- gGCGGGGGGCGUcaaaacacGCgCcgUCUCUgCg -3' miRNA: 3'- aCGUCCUCCGCGa-------CGgGuaAGAGAgG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 507 | 0.68 | 0.822061 |
Target: 5'- gGCAGGAcgccggcagccuGGCGCUGUuuGcucgcgcucgcuUUUUCUCCc -3' miRNA: 3'- aCGUCCU------------CCGCGACGggU------------AAGAGAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 975 | 0.66 | 0.896027 |
Target: 5'- cGCGGGccGGGgGaagucccuuuCUGCCCGU-CUCUCa -3' miRNA: 3'- aCGUCC--UCCgC----------GACGGGUAaGAGAGg -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 28395 | 0.67 | 0.868808 |
Target: 5'- uUGguGGAGGCGCUGgCC-UUUgacaUCg -3' miRNA: 3'- -ACguCCUCCGCGACgGGuAAGag--AGg -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 73184 | 0.71 | 0.633604 |
Target: 5'- aUGCGGGAGuGUGCggUGCCCAUgcaUUC-CCa -3' miRNA: 3'- -ACGUCCUC-CGCG--ACGGGUAa--GAGaGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 88421 | 0.69 | 0.741461 |
Target: 5'- gGCGGGGGcGCGCgGCCCAggagCcCCa -3' miRNA: 3'- aCGUCCUC-CGCGaCGGGUaagaGaGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 102008 | 0.67 | 0.847043 |
Target: 5'- gGC-GGAGGCGCUGCUCAaacaacagugcgaagUCgaUCCg -3' miRNA: 3'- aCGuCCUCCGCGACGGGUa--------------AGagAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 115696 | 1.12 | 0.00163 |
Target: 5'- aUGCAGGAGGCGCUGCCCAUUCUCUCCa -3' miRNA: 3'- -ACGUCCUCCGCGACGGGUAAGAGAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 123976 | 0.68 | 0.822061 |
Target: 5'- aGCAGGGgcacgccguGGCGUcGCCC---UUCUCCg -3' miRNA: 3'- aCGUCCU---------CCGCGaCGGGuaaGAGAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 125203 | 0.68 | 0.830302 |
Target: 5'- aGCGGGAGgacGCGCUGCUCAagCagaugcgUUCCg -3' miRNA: 3'- aCGUCCUC---CGCGACGGGUaaGa------GAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 132807 | 0.67 | 0.861488 |
Target: 5'- aGCGGG-GGCGUcGCCCGgua--UCCa -3' miRNA: 3'- aCGUCCuCCGCGaCGGGUaagagAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 169466 | 0.68 | 0.822061 |
Target: 5'- cGCAcuGGuGGCGCUGCCacuCAUUgUaCUCUg -3' miRNA: 3'- aCGU--CCuCCGCGACGG---GUAAgA-GAGG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 174893 | 0.68 | 0.813656 |
Target: 5'- cGcCAGaaguGGCGCUGCUCAUUCaaUCUgCCg -3' miRNA: 3'- aC-GUCcu--CCGCGACGGGUAAG--AGA-GG- -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 206894 | 0.66 | 0.889541 |
Target: 5'- aGguGGAGGcCGCUcacaacuuuugGCgCcgUCUCUCa -3' miRNA: 3'- aCguCCUCC-GCGA-----------CGgGuaAGAGAGg -5' |
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29201 | 5' | -57.6 | NC_006150.1 | + | 221403 | 0.66 | 0.908342 |
Target: 5'- cGCccugGGGAGGaaaGCUGCCUgccguacgUCUC-CCg -3' miRNA: 3'- aCG----UCCUCCg--CGACGGGua------AGAGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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