Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29202 | 5' | -49.7 | NC_006150.1 | + | 116015 | 1.1 | 0.014376 |
Target: 5'- cAAAACUCUGUACGACCACACAGAGCCc -3' miRNA: 3'- -UUUUGAGACAUGCUGGUGUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 33046 | 0.85 | 0.37756 |
Target: 5'- gAAGACgagGggGCGACCACGCAGAGCCa -3' miRNA: 3'- -UUUUGagaCa-UGCUGGUGUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 82435 | 0.83 | 0.467969 |
Target: 5'- gAAGGCUCUGUACGAggAUACGGAGCUg -3' miRNA: 3'- -UUUUGAGACAUGCUggUGUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 71292 | 0.82 | 0.51715 |
Target: 5'- aGGAACUCUGUgccaaaaaggcgGCGGCCA-ACGGAGCCg -3' miRNA: 3'- -UUUUGAGACA------------UGCUGGUgUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 198052 | 0.72 | 0.96007 |
Target: 5'- --uGCUCUGUGCaGugCcCACGGGcGCCa -3' miRNA: 3'- uuuUGAGACAUG-CugGuGUGUCU-CGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 45230 | 0.71 | 0.970077 |
Target: 5'- cAAAGCUUacagagGUACGAuCCGCGCAGAGg- -3' miRNA: 3'- -UUUUGAGa-----CAUGCU-GGUGUGUCUCgg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 137544 | 0.71 | 0.975661 |
Target: 5'- gGGAACaCgagGUACGACCGCACguuGGAGUg -3' miRNA: 3'- -UUUUGaGa--CAUGCUGGUGUG---UCUCGg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 106596 | 0.7 | 0.982551 |
Target: 5'- uGAGCUCUGU--GGCCACucCAGcGGCCu -3' miRNA: 3'- uUUUGAGACAugCUGGUGu-GUC-UCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 65424 | 0.7 | 0.982551 |
Target: 5'- -uAGCUCg--GCGGCCguggcGCugGGGGCCg -3' miRNA: 3'- uuUUGAGacaUGCUGG-----UGugUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 26760 | 0.69 | 0.989317 |
Target: 5'- --cGCUCUGUuCGAUCACuucuuCGGAcGCCc -3' miRNA: 3'- uuuUGAGACAuGCUGGUGu----GUCU-CGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 33608 | 0.68 | 0.996093 |
Target: 5'- aGGAGCUCcGcaaACGACgCGuCACAGAGUCg -3' miRNA: 3'- -UUUUGAGaCa--UGCUG-GU-GUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 36171 | 0.68 | 0.996674 |
Target: 5'- aGAGugUgUaGUGCGGCUucggcGCGCAGAGCa -3' miRNA: 3'- -UUUugAgA-CAUGCUGG-----UGUGUCUCGg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 124856 | 0.68 | 0.996674 |
Target: 5'- uGAAGCUCUGUACccgguGGCUcgggaGCACuugcucGAGCCc -3' miRNA: 3'- -UUUUGAGACAUG-----CUGG-----UGUGu-----CUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 124769 | 0.67 | 0.997181 |
Target: 5'- cAGGACUCaccUGUGCGACCuCG-GGAGCg -3' miRNA: 3'- -UUUUGAG---ACAUGCUGGuGUgUCUCGg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 140367 | 0.67 | 0.997181 |
Target: 5'- ---cCUCUGUGCGACagaGCguGCAGA-CCg -3' miRNA: 3'- uuuuGAGACAUGCUGg--UG--UGUCUcGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 152218 | 0.67 | 0.997581 |
Target: 5'- -uAugUCUGgcUGcuuuucggccaccGCCGCGCAGAGCg -3' miRNA: 3'- uuUugAGACauGC-------------UGGUGUGUCUCGg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 65973 | 0.67 | 0.998005 |
Target: 5'- aAAAACUCUGaAgGACgAaACGGAGCUu -3' miRNA: 3'- -UUUUGAGACaUgCUGgUgUGUCUCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 73649 | 0.67 | 0.998005 |
Target: 5'- -uAACggcGUGCGAUC-CACAGAGCg -3' miRNA: 3'- uuUUGagaCAUGCUGGuGUGUCUCGg -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 3948 | 0.67 | 0.998005 |
Target: 5'- -cAGCUgcCUGUcacgcACaGACCGCACAGcaGGCCu -3' miRNA: 3'- uuUUGA--GACA-----UG-CUGGUGUGUC--UCGG- -5' |
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29202 | 5' | -49.7 | NC_006150.1 | + | 203077 | 0.67 | 0.998616 |
Target: 5'- gAGAGCUCg--GCGACgGCGaggaGGAGCa -3' miRNA: 3'- -UUUUGAGacaUGCUGgUGUg---UCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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