miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29203 5' -49.2 NC_006150.1 + 150328 0.66 0.99984
Target:  5'- ---gCCCGaGCACGUGCAcCG-CugGa -3'
miRNA:   3'- gaaaGGGUaCGUGCAUGUaGCuGugC- -5'
29203 5' -49.2 NC_006150.1 + 116057 0.66 0.999795
Target:  5'- ---gUCgAUGUACGUGCAUgggaaaGACGCGg -3'
miRNA:   3'- gaaaGGgUACGUGCAUGUAg-----CUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 32593 0.66 0.999673
Target:  5'- ---aCCUGUGCugGUGCA-CGGacaGCGg -3'
miRNA:   3'- gaaaGGGUACGugCAUGUaGCUg--UGC- -5'
29203 5' -49.2 NC_006150.1 + 37106 0.66 0.999591
Target:  5'- gCUUUUUgAcUGCugACGgGCAUCGACACGg -3'
miRNA:   3'- -GAAAGGgU-ACG--UGCaUGUAGCUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 131671 0.67 0.999492
Target:  5'- ---cCCCAUGCACGUuuucccguuaGCAauaguccgCGGCGCu -3'
miRNA:   3'- gaaaGGGUACGUGCA----------UGUa-------GCUGUGc -5'
29203 5' -49.2 NC_006150.1 + 178672 0.67 0.999372
Target:  5'- aUUUCCUAUGCAUGUAaAUaaauaaaguuaUGACAUGa -3'
miRNA:   3'- gAAAGGGUACGUGCAUgUA-----------GCUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 8652 0.67 0.999229
Target:  5'- ---aCCUcUGCAuCGUAUAUCGACAg- -3'
miRNA:   3'- gaaaGGGuACGU-GCAUGUAGCUGUgc -5'
29203 5' -49.2 NC_006150.1 + 220762 0.67 0.999058
Target:  5'- --cUCUCAcaUGCGCG-ACGUUGGCGCc -3'
miRNA:   3'- gaaAGGGU--ACGUGCaUGUAGCUGUGc -5'
29203 5' -49.2 NC_006150.1 + 204512 0.68 0.998339
Target:  5'- aUUUCCCuuacUGuCACGcUAgAUCGAUACGu -3'
miRNA:   3'- gAAAGGGu---AC-GUGC-AUgUAGCUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 180636 0.68 0.998014
Target:  5'- gUUUCCCGcagcGCACGUGCuGUUGGCGg- -3'
miRNA:   3'- gAAAGGGUa---CGUGCAUG-UAGCUGUgc -5'
29203 5' -49.2 NC_006150.1 + 135877 0.68 0.997907
Target:  5'- --aUCCCuugcugGCAgcggaucugcgaguCGUGCAUCGAgGCGg -3'
miRNA:   3'- gaaAGGGua----CGU--------------GCAUGUAGCUgUGC- -5'
29203 5' -49.2 NC_006150.1 + 38741 0.68 0.997638
Target:  5'- --gUCUCGUGCACGggaucGCAUCGAauCAUa -3'
miRNA:   3'- gaaAGGGUACGUGCa----UGUAGCU--GUGc -5'
29203 5' -49.2 NC_006150.1 + 38976 0.69 0.993925
Target:  5'- --aUCCCGUGCACGagacCAUcugcCGGCGCa -3'
miRNA:   3'- gaaAGGGUACGUGCau--GUA----GCUGUGc -5'
29203 5' -49.2 NC_006150.1 + 153567 0.69 0.993925
Target:  5'- ---aUCCAUGgGCGUACAgaCGGCugGa -3'
miRNA:   3'- gaaaGGGUACgUGCAUGUa-GCUGugC- -5'
29203 5' -49.2 NC_006150.1 + 31101 0.69 0.993925
Target:  5'- gUUUgCCAUGCGCGgGCuuguUCGAUACc -3'
miRNA:   3'- gAAAgGGUACGUGCaUGu---AGCUGUGc -5'
29203 5' -49.2 NC_006150.1 + 71709 0.7 0.992996
Target:  5'- ---cCCCGUGCACGUAC-UUGAgaaACGc -3'
miRNA:   3'- gaaaGGGUACGUGCAUGuAGCUg--UGC- -5'
29203 5' -49.2 NC_006150.1 + 140592 0.7 0.989511
Target:  5'- --gUCUCuUGCACGgcuuUAUCGGCACGu -3'
miRNA:   3'- gaaAGGGuACGUGCau--GUAGCUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 204012 0.71 0.980862
Target:  5'- -aUUCCCuaGCGCaGUGCGUgGGCGCGu -3'
miRNA:   3'- gaAAGGGuaCGUG-CAUGUAgCUGUGC- -5'
29203 5' -49.2 NC_006150.1 + 117724 0.73 0.961037
Target:  5'- aCUUgCUgGUGCACGgcaACGUCGACGCc -3'
miRNA:   3'- -GAAaGGgUACGUGCa--UGUAGCUGUGc -5'
29203 5' -49.2 NC_006150.1 + 116301 1.1 0.01713
Target:  5'- uCUUUCCCAUGCACGUACAUCGACACGa -3'
miRNA:   3'- -GAAAGGGUACGUGCAUGUAGCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.