miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29204 3' -52.7 NC_006150.1 + 130165 0.66 0.99492
Target:  5'- gAAgGCUGCCGACGUCGAcaa-CGCUu -3'
miRNA:   3'- gUUgUGGCGGUUGUAGCUcagaGCGG- -5'
29204 3' -52.7 NC_006150.1 + 37611 0.66 0.994135
Target:  5'- aCGACACCGCCAauACAUaaaccuuGUCUU-CCg -3'
miRNA:   3'- -GUUGUGGCGGU--UGUAgcu----CAGAGcGG- -5'
29204 3' -52.7 NC_006150.1 + 107482 0.66 0.994052
Target:  5'- cCAACGCCGCCcgugaagGACAUUGuGGaCUugaacCGCCg -3'
miRNA:   3'- -GUUGUGGCGG-------UUGUAGC-UCaGA-----GCGG- -5'
29204 3' -52.7 NC_006150.1 + 140927 0.66 0.993255
Target:  5'- --uCGCgGCCAGCAccugaauacUgGAcGUCUUGCCg -3'
miRNA:   3'- guuGUGgCGGUUGU---------AgCU-CAGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 219264 0.66 0.993255
Target:  5'- gCAACGCCGCaucugCAAcCAUCGcG-CUCGCg -3'
miRNA:   3'- -GUUGUGGCG-----GUU-GUAGCuCaGAGCGg -5'
29204 3' -52.7 NC_006150.1 + 137876 0.66 0.992272
Target:  5'- ---aGCCGCCAGCGcCGAaUCUCGa- -3'
miRNA:   3'- guugUGGCGGUUGUaGCUcAGAGCgg -5'
29204 3' -52.7 NC_006150.1 + 146474 0.66 0.992272
Target:  5'- ---aACCGCCGAuuCGUCGu-UCUCGUCu -3'
miRNA:   3'- guugUGGCGGUU--GUAGCucAGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 91126 0.66 0.992272
Target:  5'- uCGACACUGCCAuCAUCGaAGgcaUCGgUg -3'
miRNA:   3'- -GUUGUGGCGGUuGUAGC-UCag-AGCgG- -5'
29204 3' -52.7 NC_006150.1 + 1175 0.66 0.992272
Target:  5'- cCGGCGCCugcGCCAACAccuccUCGccuuUCUCGCUc -3'
miRNA:   3'- -GUUGUGG---CGGUUGU-----AGCuc--AGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 68451 0.66 0.991179
Target:  5'- gCAGCACCGCUAGCggCGucagcagaggcAGUaaaGCCa -3'
miRNA:   3'- -GUUGUGGCGGUUGuaGC-----------UCAgagCGG- -5'
29204 3' -52.7 NC_006150.1 + 129495 0.66 0.991179
Target:  5'- uCAAUACCGCCuccACAUacUGAGcCUUGUUa -3'
miRNA:   3'- -GUUGUGGCGGu--UGUA--GCUCaGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 36199 0.66 0.991179
Target:  5'- gCAGCugCGUguGCAgcaGAGUgUgGCCa -3'
miRNA:   3'- -GUUGugGCGguUGUag-CUCAgAgCGG- -5'
29204 3' -52.7 NC_006150.1 + 192804 0.66 0.991179
Target:  5'- --cUACUGCCAGuCAUCu-GUCUgGCCu -3'
miRNA:   3'- guuGUGGCGGUU-GUAGcuCAGAgCGG- -5'
29204 3' -52.7 NC_006150.1 + 99732 0.66 0.991179
Target:  5'- aUAAUACCGCUGGCGagguaGAGuUCUUGUCg -3'
miRNA:   3'- -GUUGUGGCGGUUGUag---CUC-AGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 113927 0.66 0.991179
Target:  5'- -cACACCGCagagggaGGCAUUucgggaccgcgGGGcCUCGCCa -3'
miRNA:   3'- guUGUGGCGg------UUGUAG-----------CUCaGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 130717 0.66 0.989968
Target:  5'- gCAGCcauaGCCGCCugacGCAUCcAGgCUCGUCg -3'
miRNA:   3'- -GUUG----UGGCGGu---UGUAGcUCaGAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 208084 0.66 0.989968
Target:  5'- -cAC-CCGCCAgaACGUCGGaaaaacCUCGCCc -3'
miRNA:   3'- guUGuGGCGGU--UGUAGCUca----GAGCGG- -5'
29204 3' -52.7 NC_006150.1 + 182581 0.67 0.988629
Target:  5'- gGAgGCCGggcaCAGCAUgGGGUCUCGg- -3'
miRNA:   3'- gUUgUGGCg---GUUGUAgCUCAGAGCgg -5'
29204 3' -52.7 NC_006150.1 + 92529 0.67 0.988629
Target:  5'- cCAcCACCGCCAGCAUCc-----CGCCu -3'
miRNA:   3'- -GUuGUGGCGGUUGUAGcucagaGCGG- -5'
29204 3' -52.7 NC_006150.1 + 44098 0.67 0.988629
Target:  5'- aUAGCgGCCGaCCGAUAcCGAGUgauucaUCGCCg -3'
miRNA:   3'- -GUUG-UGGC-GGUUGUaGCUCAg-----AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.