miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29205 3' -54.6 NC_006150.1 + 118303 0.66 0.981352
Target:  5'- aCAAUGCGCUgcCCAccucCGugUAUCuUCUCa -3'
miRNA:   3'- gGUUGCGCGA--GGU----GCugGUAGcAGAG- -5'
29205 3' -54.6 NC_006150.1 + 107509 0.66 0.981352
Target:  5'- gCCGGCgGCGCaaucugCCGCacaGCCAUCaUCUCg -3'
miRNA:   3'- -GGUUG-CGCGa-----GGUGc--UGGUAGcAGAG- -5'
29205 3' -54.6 NC_006150.1 + 580 0.66 0.981149
Target:  5'- cCCGGCugacucaGCGCU-CGCGGCCAcacCGUCUa -3'
miRNA:   3'- -GGUUG-------CGCGAgGUGCUGGUa--GCAGAg -5'
29205 3' -54.6 NC_006150.1 + 208854 0.66 0.979255
Target:  5'- uCUAGCGCuCUCCACugggcauCCAUUGUCg- -3'
miRNA:   3'- -GGUUGCGcGAGGUGcu-----GGUAGCAGag -5'
29205 3' -54.6 NC_006150.1 + 30871 0.66 0.976989
Target:  5'- gCAugGCaaaCUCCAUGACCGU-GUCa- -3'
miRNA:   3'- gGUugCGc--GAGGUGCUGGUAgCAGag -5'
29205 3' -54.6 NC_006150.1 + 211845 0.66 0.976989
Target:  5'- uCC-ACGC-CUCUAUGGCCGaccUCGUCa- -3'
miRNA:   3'- -GGuUGCGcGAGGUGCUGGU---AGCAGag -5'
29205 3' -54.6 NC_006150.1 + 131489 0.67 0.969103
Target:  5'- uCCAuguaGCGCUCUGCGACUAcaGcCUCa -3'
miRNA:   3'- -GGUug--CGCGAGGUGCUGGUagCaGAG- -5'
29205 3' -54.6 NC_006150.1 + 106445 0.67 0.969103
Target:  5'- uCCGGgaaGCGUUCCAUGACCcaAUCuggCUCg -3'
miRNA:   3'- -GGUUg--CGCGAGGUGCUGG--UAGca-GAG- -5'
29205 3' -54.6 NC_006150.1 + 43839 0.67 0.96732
Target:  5'- aCAGCGCGCUagcuuuauucgguacCCcccucaACG-CCAUCGUcCUCg -3'
miRNA:   3'- gGUUGCGCGA---------------GG------UGCuGGUAGCA-GAG- -5'
29205 3' -54.6 NC_006150.1 + 37524 0.67 0.962878
Target:  5'- aCCAA-GCaccCUCCACGAUC-UCGUCUa -3'
miRNA:   3'- -GGUUgCGc--GAGGUGCUGGuAGCAGAg -5'
29205 3' -54.6 NC_006150.1 + 24096 0.67 0.962878
Target:  5'- -aGACGCGgUCCGgGACUcgaAUUGUCUg -3'
miRNA:   3'- ggUUGCGCgAGGUgCUGG---UAGCAGAg -5'
29205 3' -54.6 NC_006150.1 + 85328 0.67 0.959459
Target:  5'- cCCGugGUGaugaacgCCGCgGACCAUCGcgagCUCa -3'
miRNA:   3'- -GGUugCGCga-----GGUG-CUGGUAGCa---GAG- -5'
29205 3' -54.6 NC_006150.1 + 170231 0.68 0.940959
Target:  5'- uUCGACGUGCagugaccaacaaucCCGCGACCGuggcUCGUgCUCa -3'
miRNA:   3'- -GGUUGCGCGa-------------GGUGCUGGU----AGCA-GAG- -5'
29205 3' -54.6 NC_006150.1 + 219264 0.68 0.939129
Target:  5'- gCAACGcCGCaUCUGCaACCAUCGcgCUCg -3'
miRNA:   3'- gGUUGC-GCG-AGGUGcUGGUAGCa-GAG- -5'
29205 3' -54.6 NC_006150.1 + 153444 0.68 0.934396
Target:  5'- cCCAACGCGuCUCCAaGuCCcUCG-CUCc -3'
miRNA:   3'- -GGUUGCGC-GAGGUgCuGGuAGCaGAG- -5'
29205 3' -54.6 NC_006150.1 + 114402 0.69 0.92425
Target:  5'- gCGAC-CGCUgCCGCG-CCAgggcacauaUCGUCUCa -3'
miRNA:   3'- gGUUGcGCGA-GGUGCuGGU---------AGCAGAG- -5'
29205 3' -54.6 NC_006150.1 + 37912 0.69 0.918836
Target:  5'- gCCAGgGCGCUCUggGACCGUCc---- -3'
miRNA:   3'- -GGUUgCGCGAGGugCUGGUAGcagag -5'
29205 3' -54.6 NC_006150.1 + 75564 0.69 0.909703
Target:  5'- uCCAGCagcauGCGCUUCACGGgaucgugacagcuccUCAUgGUCUCg -3'
miRNA:   3'- -GGUUG-----CGCGAGGUGCU---------------GGUAgCAGAG- -5'
29205 3' -54.6 NC_006150.1 + 79293 0.69 0.90733
Target:  5'- gCgGAUGCGCaacUUCugGAgCAUUGUCUCu -3'
miRNA:   3'- -GgUUGCGCG---AGGugCUgGUAGCAGAG- -5'
29205 3' -54.6 NC_006150.1 + 8871 0.69 0.90733
Target:  5'- cUCAAgGCGCgcaACGGCuCGUCGUCUUc -3'
miRNA:   3'- -GGUUgCGCGaggUGCUG-GUAGCAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.