miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29206 3' -51.9 NC_006150.1 + 37233 0.66 0.996673
Target:  5'- cCGUGCCguagagcaGCACAUgcacacAGCCGu--UGGu -3'
miRNA:   3'- uGCACGGag------CGUGUA------UCGGCuuuACC- -5'
29206 3' -51.9 NC_006150.1 + 36797 0.66 0.995467
Target:  5'- aGCG-GCCUCGCGCAgacugcgcaccGGCgUGAGAUaGGu -3'
miRNA:   3'- -UGCaCGGAGCGUGUa----------UCG-GCUUUA-CC- -5'
29206 3' -51.9 NC_006150.1 + 88791 0.66 0.993925
Target:  5'- gGCG-GCCgaugUCGCcgucGCAUAGCCGGcggcUGGa -3'
miRNA:   3'- -UGCaCGG----AGCG----UGUAUCGGCUuu--ACC- -5'
29206 3' -51.9 NC_006150.1 + 45006 0.66 0.993925
Target:  5'- cACG-GCCaaUCGCAUcgGGuaGGAGUGGc -3'
miRNA:   3'- -UGCaCGG--AGCGUGuaUCggCUUUACC- -5'
29206 3' -51.9 NC_006150.1 + 61900 0.66 0.993925
Target:  5'- -aGUGCCUacgaaaggcCGCACGgcAGCUGAAAaguuUGGa -3'
miRNA:   3'- ugCACGGA---------GCGUGUa-UCGGCUUU----ACC- -5'
29206 3' -51.9 NC_006150.1 + 1960 0.67 0.993009
Target:  5'- -gGUGCCggugCGCAUaucGUAGCgGcuGAUGGg -3'
miRNA:   3'- ugCACGGa---GCGUG---UAUCGgCu-UUACC- -5'
29206 3' -51.9 NC_006150.1 + 12483 0.67 0.991987
Target:  5'- uACGuUGCUgUGUuCGUAGCCGGAuacGUGGg -3'
miRNA:   3'- -UGC-ACGGaGCGuGUAUCGGCUU---UACC- -5'
29206 3' -51.9 NC_006150.1 + 74671 0.67 0.988196
Target:  5'- cCGUGCUcgCGCACGUAGgUGGGAUc- -3'
miRNA:   3'- uGCACGGa-GCGUGUAUCgGCUUUAcc -5'
29206 3' -51.9 NC_006150.1 + 77727 0.67 0.988196
Target:  5'- uUGUGCCUCGCG---GGgCGAugcacGAUGGa -3'
miRNA:   3'- uGCACGGAGCGUguaUCgGCU-----UUACC- -5'
29206 3' -51.9 NC_006150.1 + 191470 0.67 0.988196
Target:  5'- uUGUGCCUCuCACu--GCUGAcaAAUGGu -3'
miRNA:   3'- uGCACGGAGcGUGuauCGGCU--UUACC- -5'
29206 3' -51.9 NC_006150.1 + 58039 0.68 0.983144
Target:  5'- aGCGgccCCUCGCACAUAGauGAGGUa- -3'
miRNA:   3'- -UGCac-GGAGCGUGUAUCggCUUUAcc -5'
29206 3' -51.9 NC_006150.1 + 116136 0.68 0.98114
Target:  5'- ---cGCCaCGCAaGUAGCCGAGGUGu -3'
miRNA:   3'- ugcaCGGaGCGUgUAUCGGCUUUACc -5'
29206 3' -51.9 NC_006150.1 + 68300 0.68 0.978964
Target:  5'- gACGUGUCUCGCAuUAUGGuaGAAAa-- -3'
miRNA:   3'- -UGCACGGAGCGU-GUAUCggCUUUacc -5'
29206 3' -51.9 NC_006150.1 + 209251 0.69 0.97046
Target:  5'- aGCGUaGCCUCGcCGCGUuuuGCUGGAaauccaggugaagaAUGGa -3'
miRNA:   3'- -UGCA-CGGAGC-GUGUAu--CGGCUU--------------UACC- -5'
29206 3' -51.9 NC_006150.1 + 117309 0.69 0.961863
Target:  5'- gACGUGCC-C-CGCAUGGCgGccAUGGa -3'
miRNA:   3'- -UGCACGGaGcGUGUAUCGgCuuUACC- -5'
29206 3' -51.9 NC_006150.1 + 205243 0.7 0.954469
Target:  5'- cGCGUcuuggGCgCUCGUuCGUGGCCGAGgucAUGGu -3'
miRNA:   3'- -UGCA-----CG-GAGCGuGUAUCGGCUU---UACC- -5'
29206 3' -51.9 NC_006150.1 + 127906 0.7 0.941657
Target:  5'- cACGUGCUUCuggugcgcCACGUAGCCGAugcuGAUGc -3'
miRNA:   3'- -UGCACGGAGc-------GUGUAUCGGCU----UUACc -5'
29206 3' -51.9 NC_006150.1 + 204821 0.74 0.803423
Target:  5'- uACGUGCUcgaaUCGgACAUuGUCGGAGUGGa -3'
miRNA:   3'- -UGCACGG----AGCgUGUAuCGGCUUUACC- -5'
29206 3' -51.9 NC_006150.1 + 117847 1.1 0.00905
Target:  5'- uACGUGCCUCGCACAUAGCCGAAAUGGu -3'
miRNA:   3'- -UGCACGGAGCGUGUAUCGGCUUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.