miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29206 5' -59.9 NC_006150.1 + 65190 0.66 0.860503
Target:  5'- cGGCCGCCgagcuagCCCGACccgaACuGAGcGCCAa- -3'
miRNA:   3'- -CUGGCGGa------GGGCUGa---UG-CUC-CGGUgg -5'
29206 5' -59.9 NC_006150.1 + 1326 0.66 0.860503
Target:  5'- uGCCGaCCUCaCUGACUACucAGGuggauCCACCu -3'
miRNA:   3'- cUGGC-GGAG-GGCUGAUGc-UCC-----GGUGG- -5'
29206 5' -59.9 NC_006150.1 + 65397 0.66 0.860503
Target:  5'- uGAUCGCCUCCUugGGCU-CGGGaGCC-Cg -3'
miRNA:   3'- -CUGGCGGAGGG--CUGAuGCUC-CGGuGg -5'
29206 5' -59.9 NC_006150.1 + 33304 0.66 0.853196
Target:  5'- -uCCuCUUCCUGGCUcuGCGuGGUCGCCc -3'
miRNA:   3'- cuGGcGGAGGGCUGA--UGCuCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 77893 0.66 0.845711
Target:  5'- gGACCGCUUgCgcaacaGACggcgAgGGGGCUACCa -3'
miRNA:   3'- -CUGGCGGAgGg-----CUGa---UgCUCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 187485 0.66 0.838053
Target:  5'- aGGCCGCCauugCCCGuuUACGgaccaGGGUC-CCg -3'
miRNA:   3'- -CUGGCGGa---GGGCugAUGC-----UCCGGuGG- -5'
29206 5' -59.9 NC_006150.1 + 102041 0.66 0.838053
Target:  5'- cGAuCCGCCg-CCGugUcaggACGucGCCGCCg -3'
miRNA:   3'- -CU-GGCGGagGGCugA----UGCucCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 149091 0.66 0.838053
Target:  5'- aACCGUC-CCUGugUGUGAGGCUcCCc -3'
miRNA:   3'- cUGGCGGaGGGCugAUGCUCCGGuGG- -5'
29206 5' -59.9 NC_006150.1 + 91935 0.66 0.830228
Target:  5'- cGGCCuGCCUgucaaCCCG--UACGAcccguacauGGCCACCg -3'
miRNA:   3'- -CUGG-CGGA-----GGGCugAUGCU---------CCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 63212 0.66 0.830228
Target:  5'- --gCGCCUCCC-ACgGCGgcaaaaagaAGGCCGCUg -3'
miRNA:   3'- cugGCGGAGGGcUGaUGC---------UCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 113885 0.66 0.822243
Target:  5'- aGCCGCaucuccgUCCGACUGuCGGacGCCACCa -3'
miRNA:   3'- cUGGCGga-----GGGCUGAU-GCUc-CGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 129274 0.66 0.822243
Target:  5'- -uCCGCCUcugcCCCGACUGC-AGGCauuUCg -3'
miRNA:   3'- cuGGCGGA----GGGCUGAUGcUCCGgu-GG- -5'
29206 5' -59.9 NC_006150.1 + 119361 0.66 0.822243
Target:  5'- aGACgGCCcuggCCuCGGCUGCGcacGCCAUCa -3'
miRNA:   3'- -CUGgCGGa---GG-GCUGAUGCuc-CGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 80354 0.66 0.822243
Target:  5'- aGugUGCCUUCgUGACgcaaaauuaGAGGCCACUc -3'
miRNA:   3'- -CugGCGGAGG-GCUGaug------CUCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 169954 0.67 0.814104
Target:  5'- uGCUGCCUCCCcucACccucgGCGucAGGCuCACCa -3'
miRNA:   3'- cUGGCGGAGGGc--UGa----UGC--UCCG-GUGG- -5'
29206 5' -59.9 NC_006150.1 + 102470 0.67 0.814104
Target:  5'- cGAUUGCgugCUCuCCGAUcuCGAGGCCGCg -3'
miRNA:   3'- -CUGGCG---GAG-GGCUGauGCUCCGGUGg -5'
29206 5' -59.9 NC_006150.1 + 172378 0.67 0.813281
Target:  5'- uGCCGUUcuaagaauuccgaUCCCGAUUugGAgaucGGCCugCu -3'
miRNA:   3'- cUGGCGG-------------AGGGCUGAugCU----CCGGugG- -5'
29206 5' -59.9 NC_006150.1 + 112941 0.67 0.805817
Target:  5'- aACCGa-UCUCGGCccgACGucGGGCCACCu -3'
miRNA:   3'- cUGGCggAGGGCUGa--UGC--UCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 117267 0.67 0.805817
Target:  5'- -uUCGUCga-CGACUAUcAGGCCACCg -3'
miRNA:   3'- cuGGCGGaggGCUGAUGcUCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 129606 0.67 0.805817
Target:  5'- aACaCGUgUCCCGcgagcaaaaGCUGCGGGGuCCACa -3'
miRNA:   3'- cUG-GCGgAGGGC---------UGAUGCUCC-GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.