miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29206 5' -59.9 NC_006150.1 + 31960 0.67 0.79739
Target:  5'- cACUGUg-CCCGAgUGucccaGAGGCCGCCa -3'
miRNA:   3'- cUGGCGgaGGGCUgAUg----CUCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 34892 0.67 0.780145
Target:  5'- cACCGCa-CCCacCUAUGGcGGCCACCg -3'
miRNA:   3'- cUGGCGgaGGGcuGAUGCU-CCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 105942 0.67 0.780145
Target:  5'- aGCUGCCauguccagCCCGACggAUGAGGCC-Cg -3'
miRNA:   3'- cUGGCGGa-------GGGCUGa-UGCUCCGGuGg -5'
29206 5' -59.9 NC_006150.1 + 92705 0.67 0.779269
Target:  5'- cACaCGCC-CCCGAUcaagcgauccaggUACGAGGCgGCg -3'
miRNA:   3'- cUG-GCGGaGGGCUG-------------AUGCUCCGgUGg -5'
29206 5' -59.9 NC_006150.1 + 133374 0.67 0.771341
Target:  5'- -uCCGCaUUCCC--CUGCGGGGCCugUg -3'
miRNA:   3'- cuGGCG-GAGGGcuGAUGCUCCGGugG- -5'
29206 5' -59.9 NC_006150.1 + 70454 0.67 0.771341
Target:  5'- uGACCGCCUCUCG-CUcCGcAGGUgCACa -3'
miRNA:   3'- -CUGGCGGAGGGCuGAuGC-UCCG-GUGg -5'
29206 5' -59.9 NC_006150.1 + 115914 0.68 0.762426
Target:  5'- cGCUGCCUuuugUCCGugUA-GAuuGGCCGCCg -3'
miRNA:   3'- cUGGCGGA----GGGCugAUgCU--CCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 88434 0.68 0.744296
Target:  5'- uGCCGCggUUCCGGCUccACGucguccGGGCCGCCc -3'
miRNA:   3'- cUGGCGg-AGGGCUGA--UGC------UCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 160906 0.68 0.744296
Target:  5'- cACC-CUUCCCGGCUAUGgAGGCUggAUCg -3'
miRNA:   3'- cUGGcGGAGGGCUGAUGC-UCCGG--UGG- -5'
29206 5' -59.9 NC_006150.1 + 71339 0.68 0.735096
Target:  5'- cAUUGCCUucggaCCCGAgaACGAGGCCGa- -3'
miRNA:   3'- cUGGCGGA-----GGGCUgaUGCUCCGGUgg -5'
29206 5' -59.9 NC_006150.1 + 167929 0.68 0.735096
Target:  5'- cACCauGCCUCCugcgccgaCGACcAUGGGGCCugCa -3'
miRNA:   3'- cUGG--CGGAGG--------GCUGaUGCUCCGGugG- -5'
29206 5' -59.9 NC_006150.1 + 118778 0.68 0.725816
Target:  5'- cACgGCCUCCgGgcagcaGCUGCGAGGUgucauggucagCACCg -3'
miRNA:   3'- cUGgCGGAGGgC------UGAUGCUCCG-----------GUGG- -5'
29206 5' -59.9 NC_006150.1 + 120539 0.69 0.688055
Target:  5'- aGCCGCCUCCUG-CU-CGcuGGUCAUCg -3'
miRNA:   3'- cUGGCGGAGGGCuGAuGCu-CCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 23314 0.69 0.678492
Target:  5'- gGGCCGCCUCCaagg-GCGAuGGCCAg- -3'
miRNA:   3'- -CUGGCGGAGGgcugaUGCU-CCGGUgg -5'
29206 5' -59.9 NC_006150.1 + 154771 0.69 0.678492
Target:  5'- -cUCGguUCUgCUGACUuCGAGGCCACCa -3'
miRNA:   3'- cuGGC--GGAgGGCUGAuGCUCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 130594 0.69 0.668895
Target:  5'- -uCCGCCUuccCCCGcuGCUAUGcuGCCGCCu -3'
miRNA:   3'- cuGGCGGA---GGGC--UGAUGCucCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 107806 0.69 0.668895
Target:  5'- cACCGCCUCCuCGGCUAUucgggcagucaGGGGCauuaGCa -3'
miRNA:   3'- cUGGCGGAGG-GCUGAUG-----------CUCCGg---UGg -5'
29206 5' -59.9 NC_006150.1 + 35132 0.7 0.649629
Target:  5'- -uCCaGCUUCCCGGCUG-GuGGCCAUCc -3'
miRNA:   3'- cuGG-CGGAGGGCUGAUgCuCCGGUGG- -5'
29206 5' -59.9 NC_006150.1 + 220179 0.7 0.639974
Target:  5'- aGCUGCCgcagCUgCGGCUGCGuuGGGCCACg -3'
miRNA:   3'- cUGGCGGa---GG-GCUGAUGC--UCCGGUGg -5'
29206 5' -59.9 NC_006150.1 + 47923 0.7 0.630314
Target:  5'- cGGCCGCCgUCgCCGAUgaugaugACGAG-CCACUg -3'
miRNA:   3'- -CUGGCGG-AG-GGCUGa------UGCUCcGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.