Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29207 | 5' | -55.7 | NC_006150.1 | + | 88304 | 0.66 | 0.919358 |
Target: 5'- --gAGCAGGGGAGgGUauGCCGGGGg- -3' miRNA: 3'- aagUUGUCCUCUCgUAc-CGGCCCUau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 36191 | 0.67 | 0.901272 |
Target: 5'- gUguGCAGcAGAGUGUGGCCaGGGAc- -3' miRNA: 3'- aAguUGUCcUCUCGUACCGG-CCCUau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 182593 | 0.68 | 0.834831 |
Target: 5'- gUCGcACAGGAGGGa--GGCCGGGc-- -3' miRNA: 3'- aAGU-UGUCCUCUCguaCCGGCCCuau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 139477 | 0.69 | 0.80911 |
Target: 5'- aUCAAgcgUGGGAGAGCcgGGUgCGGGAa- -3' miRNA: 3'- aAGUU---GUCCUCUCGuaCCG-GCCCUau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 215198 | 0.7 | 0.734057 |
Target: 5'- aUCcACAcGGAGAGCAUGaCCGuGGAUGg -3' miRNA: 3'- aAGuUGU-CCUCUCGUACcGGC-CCUAU- -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 181866 | 0.7 | 0.734057 |
Target: 5'- ---cACAGGcGGGCAUGGgCGGGAa- -3' miRNA: 3'- aaguUGUCCuCUCGUACCgGCCCUau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 32469 | 0.71 | 0.704186 |
Target: 5'- cUUCAGCGGGuGGGUcuccgGGCCGuGGAUGu -3' miRNA: 3'- -AAGUUGUCCuCUCGua---CCGGC-CCUAU- -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 107689 | 0.73 | 0.561262 |
Target: 5'- gUCGGCcgcuGGGGGAGCGacGGCCGGGGa- -3' miRNA: 3'- aAGUUG----UCCUCUCGUa-CCGGCCCUau -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 219763 | 0.75 | 0.463722 |
Target: 5'- -gCGGCAGGAccuGGCGUGGCCGcGGGUGg -3' miRNA: 3'- aaGUUGUCCUc--UCGUACCGGC-CCUAU- -5' |
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29207 | 5' | -55.7 | NC_006150.1 | + | 118118 | 1.05 | 0.006548 |
Target: 5'- uUUCAACAGGAGAGCAUGGCCGGGAUAg -3' miRNA: 3'- -AAGUUGUCCUCUCGUACCGGCCCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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