miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29209 3' -58.1 NC_006150.1 + 12771 0.66 0.911614
Target:  5'- cACcUGAGGggCCgGCGGCugugGAAUAGGUa -3'
miRNA:   3'- -UGcACUCCa-GGgCGCCG----UUUGUCCGg -5'
29209 3' -58.1 NC_006150.1 + 119012 0.66 0.911614
Target:  5'- gGCGUGAGGUgggcaUUC-CGGCGccGCuGGCCa -3'
miRNA:   3'- -UGCACUCCA-----GGGcGCCGUu-UGuCCGG- -5'
29209 3' -58.1 NC_006150.1 + 80038 0.66 0.905185
Target:  5'- ---aGAGGUCCCGUaguauuuucaguaGGCGAAgUAGGUg -3'
miRNA:   3'- ugcaCUCCAGGGCG-------------CCGUUU-GUCCGg -5'
29209 3' -58.1 NC_006150.1 + 216081 0.66 0.893466
Target:  5'- cUGUGAGaUCaCCGuUGGCAAagacaGCGGGCUg -3'
miRNA:   3'- uGCACUCcAG-GGC-GCCGUU-----UGUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 150971 0.66 0.886991
Target:  5'- -aGUGAGGUUCUGgGGUA---AGGUCu -3'
miRNA:   3'- ugCACUCCAGGGCgCCGUuugUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 2305 0.67 0.859061
Target:  5'- --uUGAGGUgUgCGUGaGUGGACAGGCCa -3'
miRNA:   3'- ugcACUCCA-GgGCGC-CGUUUGUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 85077 0.67 0.851594
Target:  5'- cGCGau-GGU-CCGCGGCGuucaucaccACGGGCCa -3'
miRNA:   3'- -UGCacuCCAgGGCGCCGUu--------UGUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 32903 0.67 0.851594
Target:  5'- gACGUccaGGGUCCUguGUGGCAAGCgucugAGGCg -3'
miRNA:   3'- -UGCAc--UCCAGGG--CGCCGUUUG-----UCCGg -5'
29209 3' -58.1 NC_006150.1 + 140983 0.68 0.828117
Target:  5'- cGCGcUGAGGUUCUggGCGGCGAuuacGguGGUCc -3'
miRNA:   3'- -UGC-ACUCCAGGG--CGCCGUU----UguCCGG- -5'
29209 3' -58.1 NC_006150.1 + 103226 0.69 0.767935
Target:  5'- aGCGUGcgcaguggcuGGGaUCCUGCGcgacGCAaugaugGACAGGCCg -3'
miRNA:   3'- -UGCAC----------UCC-AGGGCGC----CGU------UUGUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 116692 0.69 0.740317
Target:  5'- gAUGUGAaaucGGUcgcCCCGUGGCGuu-GGGCCg -3'
miRNA:   3'- -UGCACU----CCA---GGGCGCCGUuugUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 88805 0.7 0.721456
Target:  5'- aACGggGGGGUuuUCgGCGGCAucCAGGUCg -3'
miRNA:   3'- -UGCa-CUCCA--GGgCGCCGUuuGUCCGG- -5'
29209 3' -58.1 NC_006150.1 + 120082 0.71 0.65364
Target:  5'- aACGUGAGG-CCCGUGGCGccauuaGCCc -3'
miRNA:   3'- -UGCACUCCaGGGCGCCGUuuguc-CGG- -5'
29209 3' -58.1 NC_006150.1 + 88677 0.72 0.594779
Target:  5'- gACGUGGagccGGaaCCGCGGCAGACccagcgcGGCCg -3'
miRNA:   3'- -UGCACU----CCagGGCGCCGUUUGu------CCGG- -5'
29209 3' -58.1 NC_006150.1 + 120151 1.12 0.001942
Target:  5'- aACGUGAGGUCCCGCGGCAAACAGGCCa -3'
miRNA:   3'- -UGCACUCCAGGGCGCCGUUUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.