miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29209 5' -51.8 NC_006150.1 + 170104 0.66 0.998037
Target:  5'- cCGAUUCUG-C-GUCCGcgGAGuCCGCa -3'
miRNA:   3'- cGCUAGGGCaGaCAGGUuaCUU-GGCG- -5'
29209 5' -51.8 NC_006150.1 + 120914 0.66 0.997674
Target:  5'- uGCGGUa-UGUUUGUCCGuaccguacaaacAUGAGCCGa -3'
miRNA:   3'- -CGCUAggGCAGACAGGU------------UACUUGGCg -5'
29209 5' -51.8 NC_006150.1 + 208518 0.66 0.997257
Target:  5'- -aGG-CCUGUCUGUCUGGcUGGuuGCCGUa -3'
miRNA:   3'- cgCUaGGGCAGACAGGUU-ACU--UGGCG- -5'
29209 5' -51.8 NC_006150.1 + 219149 0.66 0.997257
Target:  5'- -gGAUCuUCGUCU-UCCucgGGACCGCu -3'
miRNA:   3'- cgCUAG-GGCAGAcAGGuuaCUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 205131 0.66 0.99678
Target:  5'- uGCGcagCuCCGUaacgGUCUucAUGAGCCGCa -3'
miRNA:   3'- -CGCua-G-GGCAga--CAGGu-UACUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 23290 0.66 0.996728
Target:  5'- --aAUCaCCGUCUccaccccGUCCAG-GGGCCGCc -3'
miRNA:   3'- cgcUAG-GGCAGA-------CAGGUUaCUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 203361 0.66 0.996236
Target:  5'- -aGAUCgCCGUC-GUCCAcAUGAaaAUCGUg -3'
miRNA:   3'- cgCUAG-GGCAGaCAGGU-UACU--UGGCG- -5'
29209 5' -51.8 NC_006150.1 + 124834 0.66 0.995618
Target:  5'- -aGGUCCCGUUcccGUCgGGUGAugauucaugACUGCa -3'
miRNA:   3'- cgCUAGGGCAGa--CAGgUUACU---------UGGCG- -5'
29209 5' -51.8 NC_006150.1 + 187716 0.66 0.995618
Target:  5'- cGUGA-CCUGUCagauUGUCC-GUGAGCCa- -3'
miRNA:   3'- -CGCUaGGGCAG----ACAGGuUACUUGGcg -5'
29209 5' -51.8 NC_006150.1 + 71249 0.67 0.995067
Target:  5'- uCGAUCCCGUCUGgcggcguugcgacaCCAccacagcaacAGCCGCa -3'
miRNA:   3'- cGCUAGGGCAGACa-------------GGUuac-------UUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 69338 0.67 0.994218
Target:  5'- cGCGAgcacaagaguccgugCCCGUg---CCAcGUGAGCCGCa -3'
miRNA:   3'- -CGCUa--------------GGGCAgacaGGU-UACUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 62957 0.67 0.993255
Target:  5'- cGCGGUCCCGUUgaacgGUC--GUGAGagaGCa -3'
miRNA:   3'- -CGCUAGGGCAGa----CAGguUACUUgg-CG- -5'
29209 5' -51.8 NC_006150.1 + 38980 0.67 0.993255
Target:  5'- uGCGAUCCCGugcacgagaccaUCUG-CCGgcgcAUGcAGCCGg -3'
miRNA:   3'- -CGCUAGGGC------------AGACaGGU----UAC-UUGGCg -5'
29209 5' -51.8 NC_006150.1 + 132460 0.67 0.992272
Target:  5'- cGCGGUCgCGgcUCUGgcCCAGgacGAGCUGCu -3'
miRNA:   3'- -CGCUAGgGC--AGACa-GGUUa--CUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 146716 0.68 0.988629
Target:  5'- cCGAUCCgGaCUGacaUCCGA-GAACUGCg -3'
miRNA:   3'- cGCUAGGgCaGAC---AGGUUaCUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 107345 0.69 0.971856
Target:  5'- ----aCCCGUCUGaugugguggugaCUAGUGAACCGCc -3'
miRNA:   3'- cgcuaGGGCAGACa-----------GGUUACUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 130345 0.7 0.955034
Target:  5'- cGCGAUCCCuaacuacguuaucaGUuacCUGUCCAAcu-ACCGCc -3'
miRNA:   3'- -CGCUAGGG--------------CA---GACAGGUUacuUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 189859 0.71 0.948167
Target:  5'- aGCaGUCCCG-CUGUCUAGUuAGCUGUg -3'
miRNA:   3'- -CGcUAGGGCaGACAGGUUAcUUGGCG- -5'
29209 5' -51.8 NC_006150.1 + 120117 1.16 0.004906
Target:  5'- aGCGAUCCCGUCUGUCCAAUGAACCGCa -3'
miRNA:   3'- -CGCUAGGGCAGACAGGUUACUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.