miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2921 5' -53.6 NC_001493.1 + 126780 0.66 0.952744
Target:  5'- --cGGUCUgGGUGUgagcguccgucCCACgGGUCGUcgaGCc -3'
miRNA:   3'- caaCCAGAgCCACA-----------GGUG-CCAGUA---CG- -5'
2921 5' -53.6 NC_001493.1 + 11226 0.66 0.952744
Target:  5'- --cGGUCUgGGUGUgagcguccgucCCACgGGUCGUcgaGCc -3'
miRNA:   3'- caaCCAGAgCCACA-----------GGUG-CCAGUA---CG- -5'
2921 5' -53.6 NC_001493.1 + 24458 0.66 0.944076
Target:  5'- -aUGGaCUCGGUGgacgaaaCCGgGGUgGUGUa -3'
miRNA:   3'- caACCaGAGCCACa------GGUgCCAgUACG- -5'
2921 5' -53.6 NC_001493.1 + 25860 0.67 0.939376
Target:  5'- --cGGUUcaGGUGUCCGCGGU---GCg -3'
miRNA:   3'- caaCCAGagCCACAGGUGCCAguaCG- -5'
2921 5' -53.6 NC_001493.1 + 128452 0.67 0.929236
Target:  5'- uGggGGUCUCGGUGgagagcgcccgaUCC-CGGUgAgGCu -3'
miRNA:   3'- -CaaCCAGAGCCAC------------AGGuGCCAgUaCG- -5'
2921 5' -53.6 NC_001493.1 + 15873 0.67 0.929236
Target:  5'- --aGGUCggGGagcgGUCgCACGGcCGUGCg -3'
miRNA:   3'- caaCCAGagCCa---CAG-GUGCCaGUACG- -5'
2921 5' -53.6 NC_001493.1 + 131427 0.67 0.929236
Target:  5'- --aGGUCggGGagcgGUCgCACGGcCGUGCg -3'
miRNA:   3'- caaCCAGagCCa---CAG-GUGCCaGUACG- -5'
2921 5' -53.6 NC_001493.1 + 12898 0.67 0.929236
Target:  5'- uGggGGUCUCGGUGgagagcgcccgaUCC-CGGUgAgGCu -3'
miRNA:   3'- -CaaCCAGAGCCAC------------AGGuGCCAgUaCG- -5'
2921 5' -53.6 NC_001493.1 + 32136 0.67 0.9181
Target:  5'- -aUGuGUUgcuGGUGUCgACGGUCGUGa -3'
miRNA:   3'- caAC-CAGag-CCACAGgUGCCAGUACg -5'
2921 5' -53.6 NC_001493.1 + 60710 0.68 0.912161
Target:  5'- --cGGUCauugauugaGGUGUCCGCuaUCGUGCa -3'
miRNA:   3'- caaCCAGag-------CCACAGGUGccAGUACG- -5'
2921 5' -53.6 NC_001493.1 + 95702 0.68 0.912161
Target:  5'- cGUUGGUCUCGGaGUC---GGUCAggauaGCg -3'
miRNA:   3'- -CAACCAGAGCCaCAGgugCCAGUa----CG- -5'
2921 5' -53.6 NC_001493.1 + 31898 0.68 0.905974
Target:  5'- -aUGGaUCgagacgCGGUGaccguguguUCCACGGUCgGUGCc -3'
miRNA:   3'- caACC-AGa-----GCCAC---------AGGUGCCAG-UACG- -5'
2921 5' -53.6 NC_001493.1 + 48607 0.68 0.905974
Target:  5'- --cGGUCUUGGUGUuggCC-CGGaagaCGUGCu -3'
miRNA:   3'- caaCCAGAGCCACA---GGuGCCa---GUACG- -5'
2921 5' -53.6 NC_001493.1 + 31694 0.69 0.856041
Target:  5'- uUUGGaaUUGGUGUCUugACGGaUCGUGUg -3'
miRNA:   3'- cAACCagAGCCACAGG--UGCC-AGUACG- -5'
2921 5' -53.6 NC_001493.1 + 121040 0.69 0.848018
Target:  5'- --cGGUCaCGGUGcCCACGG--GUGCc -3'
miRNA:   3'- caaCCAGaGCCACaGGUGCCagUACG- -5'
2921 5' -53.6 NC_001493.1 + 70652 0.69 0.839791
Target:  5'- -aUGGUCgUCGcGUGgaacgaCGCGGUCAUGa -3'
miRNA:   3'- caACCAG-AGC-CACag----GUGCCAGUACg -5'
2921 5' -53.6 NC_001493.1 + 129272 0.7 0.831368
Target:  5'- --cGGUCUCGGgccucuccaCCGCGGUCcgGg -3'
miRNA:   3'- caaCCAGAGCCaca------GGUGCCAGuaCg -5'
2921 5' -53.6 NC_001493.1 + 13718 0.7 0.831368
Target:  5'- --cGGUCUCGGgccucuccaCCGCGGUCcgGg -3'
miRNA:   3'- caaCCAGAGCCaca------GGUGCCAGuaCg -5'
2921 5' -53.6 NC_001493.1 + 93370 0.7 0.831368
Target:  5'- cGUUGGaagCUCGGggGUUCGgGGaCAUGCu -3'
miRNA:   3'- -CAACCa--GAGCCa-CAGGUgCCaGUACG- -5'
2921 5' -53.6 NC_001493.1 + 98287 0.71 0.777167
Target:  5'- --cGGUCUUgGGUGUCCACGaUCGUa- -3'
miRNA:   3'- caaCCAGAG-CCACAGGUGCcAGUAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.