Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29210 | 3' | -52.2 | NC_006150.1 | + | 90881 | 0.66 | 0.995154 |
Target: 5'- --gGGUCG-CGGCCaucUCCGCCCUgaGCAc -3' miRNA: 3'- cagCCAGUaGUUGG---AGGUGGGAa-UGU- -5' |
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29210 | 3' | -52.2 | NC_006150.1 | + | 130005 | 0.66 | 0.994387 |
Target: 5'- cUCGG-CAUCGcgucACCUCucauCACuCCUUGCAa -3' miRNA: 3'- cAGCCaGUAGU----UGGAG----GUG-GGAAUGU- -5' |
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29210 | 3' | -52.2 | NC_006150.1 | + | 168935 | 0.66 | 0.993525 |
Target: 5'- uGUCGGUCAUCuggGCCgCUGUCCUgGCAa -3' miRNA: 3'- -CAGCCAGUAGu--UGGaGGUGGGAaUGU- -5' |
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29210 | 3' | -52.2 | NC_006150.1 | + | 140637 | 0.7 | 0.948358 |
Target: 5'- -aCGGUCAUCGACaucuuucccCCGCCCagACAc -3' miRNA: 3'- caGCCAGUAGUUGga-------GGUGGGaaUGU- -5' |
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29210 | 3' | -52.2 | NC_006150.1 | + | 32444 | 0.74 | 0.770875 |
Target: 5'- cUCGGcaguguagucaUCAUCAGCCUCCAgUUCUUGCAg -3' miRNA: 3'- cAGCC-----------AGUAGUUGGAGGU-GGGAAUGU- -5' |
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29210 | 3' | -52.2 | NC_006150.1 | + | 123803 | 1.09 | 0.009319 |
Target: 5'- cGUCGGUCAUCAACCUCCACCCUUACAu -3' miRNA: 3'- -CAGCCAGUAGUUGGAGGUGGGAAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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