miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29210 5' -54.3 NC_006150.1 + 131612 0.7 0.848196
Target:  5'- --aGCAUuagccaAGUGGUGGAAGGCGcgccgauaGCUCg -3'
miRNA:   3'- acgCGUA------UCGCCACCUUCCGU--------UGAGg -5'
29210 5' -54.3 NC_006150.1 + 132429 0.69 0.916675
Target:  5'- aUGgGC-UGGCGGUGGccGAGGaguuuguCUCCg -3'
miRNA:   3'- -ACgCGuAUCGCCACC--UUCCguu----GAGG- -5'
29210 5' -54.3 NC_006150.1 + 133389 0.66 0.976737
Target:  5'- gGgGCcuGUGGCGGacgacgccgUGGAaaccgaGGGCGGCUCg -3'
miRNA:   3'- aCgCG--UAUCGCC---------ACCU------UCCGUUGAGg -5'
29210 5' -54.3 NC_006150.1 + 139380 0.67 0.956081
Target:  5'- gUGCGC-UGGCGGacgguccgccgccUGGGguacgggagggcaucAGGCGACUUUg -3'
miRNA:   3'- -ACGCGuAUCGCC-------------ACCU---------------UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 142785 0.68 0.932776
Target:  5'- ----gGUGGCGGUGGAuuuuGGCGAUcaUCCc -3'
miRNA:   3'- acgcgUAUCGCCACCUu---CCGUUG--AGG- -5'
29210 5' -54.3 NC_006150.1 + 147092 0.77 0.483064
Target:  5'- gGuCGUGUGGUGGUGGggGGCuGCUUg -3'
miRNA:   3'- aC-GCGUAUCGCCACCuuCCGuUGAGg -5'
29210 5' -54.3 NC_006150.1 + 152521 0.71 0.812507
Target:  5'- gGCGCugacuuggauuuggAUGGCGGUGGAAucauacacacGGCuGACUCg -3'
miRNA:   3'- aCGCG--------------UAUCGCCACCUU----------CCG-UUGAGg -5'
29210 5' -54.3 NC_006150.1 + 170380 0.73 0.731894
Target:  5'- cGUGCAgcuuuUGGCGGaggggcaGGAAGGUgcgGACUCCg -3'
miRNA:   3'- aCGCGU-----AUCGCCa------CCUUCCG---UUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 172625 0.7 0.871015
Target:  5'- cUGCGCAcAGCGGUuucgauGAcGGCAGCcucUCCg -3'
miRNA:   3'- -ACGCGUaUCGCCAc-----CUuCCGUUG---AGG- -5'
29210 5' -54.3 NC_006150.1 + 173232 0.72 0.751212
Target:  5'- cGCGgGUuGUGGUGGuuaguugucuucAGGGCAGCUCg -3'
miRNA:   3'- aCGCgUAuCGCCACC------------UUCCGUUGAGg -5'
29210 5' -54.3 NC_006150.1 + 181275 0.66 0.976737
Target:  5'- cGCGgAgGGCGG-GaGAGGCGGCUgCCc -3'
miRNA:   3'- aCGCgUaUCGCCaCcUUCCGUUGA-GG- -5'
29210 5' -54.3 NC_006150.1 + 181772 0.66 0.979063
Target:  5'- --aGCAUGGUGGcGcGAGGGCuAGCUgCa -3'
miRNA:   3'- acgCGUAUCGCCaC-CUUCCG-UUGAgG- -5'
29210 5' -54.3 NC_006150.1 + 183579 0.68 0.942334
Target:  5'- cUGgGUAggaGGCGGUGGAgggGGGUGGCUa- -3'
miRNA:   3'- -ACgCGUa--UCGCCACCU---UCCGUUGAgg -5'
29210 5' -54.3 NC_006150.1 + 189528 0.72 0.770116
Target:  5'- gGCGUAUGGgcaGGgauaucgugGGAaagaccAGGCAGCUCCg -3'
miRNA:   3'- aCGCGUAUCg--CCa--------CCU------UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 203039 0.72 0.770116
Target:  5'- gGCGgagGUGGUGGUGGA-GGCAAaUCCu -3'
miRNA:   3'- aCGCg--UAUCGCCACCUuCCGUUgAGG- -5'
29210 5' -54.3 NC_006150.1 + 205311 0.66 0.97769
Target:  5'- -aCGC-UGGUGGUGGGGgauuagagcuaaucuGGCuACUCCc -3'
miRNA:   3'- acGCGuAUCGCCACCUU---------------CCGuUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 214821 0.67 0.961867
Target:  5'- aGCGUagcgacgacgaugAUGGUGGUGGuggcGGCGauGCUUCa -3'
miRNA:   3'- aCGCG-------------UAUCGCCACCuu--CCGU--UGAGG- -5'
29210 5' -54.3 NC_006150.1 + 216594 0.75 0.591046
Target:  5'- uUGCagGCAUAGCGaGgcggaacgcUGGAgacGGGCGACUCCg -3'
miRNA:   3'- -ACG--CGUAUCGC-C---------ACCU---UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 217603 0.74 0.662069
Target:  5'- aGCGCAgGGCGGUGcGcucuuGGCGACUgCg -3'
miRNA:   3'- aCGCGUaUCGCCAC-Cuu---CCGUUGAgG- -5'
29210 5' -54.3 NC_006150.1 + 220265 0.67 0.954547
Target:  5'- uUGgGCAUGcauacacGCGG-GGGAGGU--CUCCa -3'
miRNA:   3'- -ACgCGUAU-------CGCCaCCUUCCGuuGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.