miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29210 5' -54.3 NC_006150.1 + 109211 0.66 0.976737
Target:  5'- gGCGCAggauuUGGCaGGUGaggcguucGAAGGUGACggCCg -3'
miRNA:   3'- aCGCGU-----AUCG-CCAC--------CUUCCGUUGa-GG- -5'
29210 5' -54.3 NC_006150.1 + 142785 0.68 0.932776
Target:  5'- ----gGUGGCGGUGGAuuuuGGCGAUcaUCCc -3'
miRNA:   3'- acgcgUAUCGCCACCUu---CCGUUG--AGG- -5'
29210 5' -54.3 NC_006150.1 + 115435 0.67 0.946763
Target:  5'- aGCcuGCGUGGUcGUGGAgagaauGGGCAGCgCCu -3'
miRNA:   3'- aCG--CGUAUCGcCACCU------UCCGUUGaGG- -5'
29210 5' -54.3 NC_006150.1 + 220265 0.67 0.954547
Target:  5'- uUGgGCAUGcauacacGCGG-GGGAGGU--CUCCa -3'
miRNA:   3'- -ACgCGUAU-------CGCCaCCUUCCGuuGAGG- -5'
29210 5' -54.3 NC_006150.1 + 139380 0.67 0.956081
Target:  5'- gUGCGC-UGGCGGacgguccgccgccUGGGguacgggagggcaucAGGCGACUUUg -3'
miRNA:   3'- -ACGCGuAUCGCC-------------ACCU---------------UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 88806 0.67 0.958682
Target:  5'- cGuCGCAUagccGGCGGcUGGA-GGCGAC-CUg -3'
miRNA:   3'- aC-GCGUA----UCGCC-ACCUuCCGUUGaGG- -5'
29210 5' -54.3 NC_006150.1 + 96514 0.66 0.974227
Target:  5'- gGCGCAaguacuaGGCGcGUGGAuaaaaGCAGCgUCCa -3'
miRNA:   3'- aCGCGUa------UCGC-CACCUuc---CGUUG-AGG- -5'
29210 5' -54.3 NC_006150.1 + 109324 0.66 0.974227
Target:  5'- aUGUGag-AGCuGGUGGGAGGCcgGugUCa -3'
miRNA:   3'- -ACGCguaUCG-CCACCUUCCG--UugAGg -5'
29210 5' -54.3 NC_006150.1 + 133389 0.66 0.976737
Target:  5'- gGgGCcuGUGGCGGacgacgccgUGGAaaccgaGGGCGGCUCg -3'
miRNA:   3'- aCgCG--UAUCGCC---------ACCU------UCCGUUGAGg -5'
29210 5' -54.3 NC_006150.1 + 132429 0.69 0.916675
Target:  5'- aUGgGC-UGGCGGUGGccGAGGaguuuguCUCCg -3'
miRNA:   3'- -ACgCGuAUCGCCACC--UUCCguu----GAGG- -5'
29210 5' -54.3 NC_006150.1 + 70924 0.69 0.885182
Target:  5'- gGUGUG-GGCGGUGGAaaGGGCGGCg-- -3'
miRNA:   3'- aCGCGUaUCGCCACCU--UCCGUUGagg -5'
29210 5' -54.3 NC_006150.1 + 118786 0.7 0.871744
Target:  5'- uUGCGCAgcagcaccuggaugaAGCaGUGGAugAGGCcacGCUCCa -3'
miRNA:   3'- -ACGCGUa--------------UCGcCACCU--UCCGu--UGAGG- -5'
29210 5' -54.3 NC_006150.1 + 92367 0.74 0.662069
Target:  5'- cUGgGCcgGGCGGUGGGgauucGGGCGAgUCg -3'
miRNA:   3'- -ACgCGuaUCGCCACCU-----UCCGUUgAGg -5'
29210 5' -54.3 NC_006150.1 + 173232 0.72 0.751212
Target:  5'- cGCGgGUuGUGGUGGuuaguugucuucAGGGCAGCUCg -3'
miRNA:   3'- aCGCgUAuCGCCACC------------UUCCGUUGAGg -5'
29210 5' -54.3 NC_006150.1 + 189528 0.72 0.770116
Target:  5'- gGCGUAUGGgcaGGgauaucgugGGAaagaccAGGCAGCUCCg -3'
miRNA:   3'- aCGCGUAUCg--CCa--------CCU------UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 203039 0.72 0.770116
Target:  5'- gGCGgagGUGGUGGUGGA-GGCAAaUCCu -3'
miRNA:   3'- aCGCg--UAUCGCCACCUuCCGUUgAGG- -5'
29210 5' -54.3 NC_006150.1 + 152521 0.71 0.812507
Target:  5'- gGCGCugacuuggauuuggAUGGCGGUGGAAucauacacacGGCuGACUCg -3'
miRNA:   3'- aCGCG--------------UAUCGCCACCUU----------CCG-UUGAGg -5'
29210 5' -54.3 NC_006150.1 + 92852 0.71 0.832007
Target:  5'- cUGCGgGUuGCGGUGGGuauaguucAGGCAGCg-- -3'
miRNA:   3'- -ACGCgUAuCGCCACCU--------UCCGUUGagg -5'
29210 5' -54.3 NC_006150.1 + 221179 0.7 0.856004
Target:  5'- gGCGCugaauGCGGgucUGGcAGGC-ACUCCg -3'
miRNA:   3'- aCGCGuau--CGCC---ACCuUCCGuUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 172625 0.7 0.871015
Target:  5'- cUGCGCAcAGCGGUuucgauGAcGGCAGCcucUCCg -3'
miRNA:   3'- -ACGCGUaUCGCCAc-----CUuCCGUUG---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.