Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 66052 | 0.68 | 0.941421 |
Target: 5'- aGCGCucgcucugccGUGGUGGccugacGGuGCAACUCCa -3' miRNA: 3'- aCGCGuau-------CGCCACCu-----UC-CGUUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 63561 | 0.68 | 0.932776 |
Target: 5'- aGCGUucGUAGCGGgucagGGcGGGUAagGCUUCu -3' miRNA: 3'- aCGCG--UAUCGCCa----CCuUCCGU--UGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 142785 | 0.68 | 0.932776 |
Target: 5'- ----gGUGGCGGUGGAuuuuGGCGAUcaUCCc -3' miRNA: 3'- acgcgUAUCGCCACCUu---CCGUUG--AGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 132429 | 0.69 | 0.916675 |
Target: 5'- aUGgGC-UGGCGGUGGccGAGGaguuuguCUCCg -3' miRNA: 3'- -ACgCGuAUCGCCACC--UUCCguu----GAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 70924 | 0.69 | 0.885182 |
Target: 5'- gGUGUG-GGCGGUGGAaaGGGCGGCg-- -3' miRNA: 3'- aCGCGUaUCGCCACCU--UCCGUUGagg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 118786 | 0.7 | 0.871744 |
Target: 5'- uUGCGCAgcagcaccuggaugaAGCaGUGGAugAGGCcacGCUCCa -3' miRNA: 3'- -ACGCGUa--------------UCGcCACCU--UCCGu--UGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 172625 | 0.7 | 0.871015 |
Target: 5'- cUGCGCAcAGCGGUuucgauGAcGGCAGCcucUCCg -3' miRNA: 3'- -ACGCGUaUCGCCAc-----CUuCCGUUG---AGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 221179 | 0.7 | 0.856004 |
Target: 5'- gGCGCugaauGCGGgucUGGcAGGC-ACUCCg -3' miRNA: 3'- aCGCGuau--CGCC---ACCuUCCGuUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 131612 | 0.7 | 0.848196 |
Target: 5'- --aGCAUuagccaAGUGGUGGAAGGCGcgccgauaGCUCg -3' miRNA: 3'- acgCGUA------UCGCCACCUUCCGU--------UGAGg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 92852 | 0.71 | 0.832007 |
Target: 5'- cUGCGgGUuGCGGUGGGuauaguucAGGCAGCg-- -3' miRNA: 3'- -ACGCgUAuCGCCACCU--------UCCGUUGagg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 152521 | 0.71 | 0.812507 |
Target: 5'- gGCGCugacuuggauuuggAUGGCGGUGGAAucauacacacGGCuGACUCg -3' miRNA: 3'- aCGCG--------------UAUCGCCACCUU----------CCG-UUGAGg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 106672 | 0.72 | 0.770116 |
Target: 5'- aGCGCuugucGUAGCGcagcuugGGAAGGC-GCUCCu -3' miRNA: 3'- aCGCG-----UAUCGCca-----CCUUCCGuUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 203039 | 0.72 | 0.770116 |
Target: 5'- gGCGgagGUGGUGGUGGA-GGCAAaUCCu -3' miRNA: 3'- aCGCg--UAUCGCCACCUuCCGUUgAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 189528 | 0.72 | 0.770116 |
Target: 5'- gGCGUAUGGgcaGGgauaucgugGGAaagaccAGGCAGCUCCg -3' miRNA: 3'- aCGCGUAUCg--CCa--------CCU------UCCGUUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 173232 | 0.72 | 0.751212 |
Target: 5'- cGCGgGUuGUGGUGGuuaguugucuucAGGGCAGCUCg -3' miRNA: 3'- aCGCgUAuCGCCACC------------UUCCGUUGAGg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 170380 | 0.73 | 0.731894 |
Target: 5'- cGUGCAgcuuuUGGCGGaggggcaGGAAGGUgcgGACUCCg -3' miRNA: 3'- aCGCGU-----AUCGCCa------CCUUCCG---UUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 92367 | 0.74 | 0.662069 |
Target: 5'- cUGgGCcgGGCGGUGGGgauucGGGCGAgUCg -3' miRNA: 3'- -ACgCGuaUCGCCACCU-----UCCGUUgAGg -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 217603 | 0.74 | 0.662069 |
Target: 5'- aGCGCAgGGCGGUGcGcucuuGGCGACUgCg -3' miRNA: 3'- aCGCGUaUCGCCAC-Cuu---CCGUUGAgG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 216594 | 0.75 | 0.591046 |
Target: 5'- uUGCagGCAUAGCGaGgcggaacgcUGGAgacGGGCGACUCCg -3' miRNA: 3'- -ACG--CGUAUCGC-C---------ACCU---UCCGUUGAGG- -5' |
|||||||
29210 | 5' | -54.3 | NC_006150.1 | + | 147092 | 0.77 | 0.483064 |
Target: 5'- gGuCGUGUGGUGGUGGggGGCuGCUUg -3' miRNA: 3'- aC-GCGUAUCGCCACCuuCCGuUGAGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home