miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29213 5' -53.8 NC_006150.1 + 117988 0.66 0.983019
Target:  5'- cGGGugGCAcagGCauu-GCAGCGCGUc -3'
miRNA:   3'- -CCUugCGUagaCGaacuCGUCGCGCA- -5'
29213 5' -53.8 NC_006150.1 + 106935 0.66 0.981014
Target:  5'- uGAuCGCAUg-GCUUGGG-AGCGCGg -3'
miRNA:   3'- cCUuGCGUAgaCGAACUCgUCGCGCa -5'
29213 5' -53.8 NC_006150.1 + 2344 0.66 0.980804
Target:  5'- uGGAAUGCcgucgauggagcuGUCggagucgguggaUGUUUGAGguGUGCGUg -3'
miRNA:   3'- -CCUUGCG-------------UAG------------ACGAACUCguCGCGCA- -5'
29213 5' -53.8 NC_006150.1 + 181285 0.66 0.973936
Target:  5'- gGGAGagGCggCUGCccUGGGCGGCgGCGg -3'
miRNA:   3'- -CCUUg-CGuaGACGa-ACUCGUCG-CGCa -5'
29213 5' -53.8 NC_006150.1 + 182656 0.67 0.971199
Target:  5'- uGGAGCGCAUUga-UUGA-CAGCGCc- -3'
miRNA:   3'- -CCUUGCGUAGacgAACUcGUCGCGca -5'
29213 5' -53.8 NC_006150.1 + 125209 0.67 0.971199
Target:  5'- aGGACGCG-CUGCUcaAGCAGaUGCGUu -3'
miRNA:   3'- cCUUGCGUaGACGAacUCGUC-GCGCA- -5'
29213 5' -53.8 NC_006150.1 + 56133 0.67 0.968261
Target:  5'- aGGACGCAUCUGg--GAGCuAGCaGUGa -3'
miRNA:   3'- cCUUGCGUAGACgaaCUCG-UCG-CGCa -5'
29213 5' -53.8 NC_006150.1 + 8060 0.67 0.967339
Target:  5'- ---cUGCAUCUGCUaccgauuaaaaagaUGGGCcAGCGCa- -3'
miRNA:   3'- ccuuGCGUAGACGA--------------ACUCG-UCGCGca -5'
29213 5' -53.8 NC_006150.1 + 90657 0.68 0.95036
Target:  5'- aGGAGCGUcgCUGCa--AGUGGCGCu- -3'
miRNA:   3'- -CCUUGCGuaGACGaacUCGUCGCGca -5'
29213 5' -53.8 NC_006150.1 + 74260 0.68 0.941618
Target:  5'- cGAAUGCGUgucgcaaaugCUGCU--GGCGGCGCGc -3'
miRNA:   3'- cCUUGCGUA----------GACGAacUCGUCGCGCa -5'
29213 5' -53.8 NC_006150.1 + 32919 0.68 0.931936
Target:  5'- cGGAGCGCgGUCggcgGCggggaUGGGCAGuCGCa- -3'
miRNA:   3'- -CCUUGCG-UAGa---CGa----ACUCGUC-GCGca -5'
29213 5' -53.8 NC_006150.1 + 75800 0.69 0.903572
Target:  5'- -aAGCGCAUgCUGCUggauaagGAGCAGCugGCGc -3'
miRNA:   3'- ccUUGCGUA-GACGAa------CUCGUCG--CGCa -5'
29213 5' -53.8 NC_006150.1 + 120502 0.7 0.883751
Target:  5'- aGGugGCAcacagUCUGCUcGGGCAGC-CGUa -3'
miRNA:   3'- cCUugCGU-----AGACGAaCUCGUCGcGCA- -5'
29213 5' -53.8 NC_006150.1 + 205042 0.71 0.853462
Target:  5'- uGGAACaucaguGCAUCUGCccucacgUUGAGgAGCGUGa -3'
miRNA:   3'- -CCUUG------CGUAGACG-------AACUCgUCGCGCa -5'
29213 5' -53.8 NC_006150.1 + 135991 0.72 0.812912
Target:  5'- uGGcACGCGUgCUGCUggaaGGCAGCGCu- -3'
miRNA:   3'- -CCuUGCGUA-GACGAac--UCGUCGCGca -5'
29213 5' -53.8 NC_006150.1 + 102268 0.72 0.786092
Target:  5'- cGGAucgacuuCGCAcugUUGUUUGAGCAGCGCc- -3'
miRNA:   3'- -CCUu------GCGUa--GACGAACUCGUCGCGca -5'
29213 5' -53.8 NC_006150.1 + 53417 0.76 0.596449
Target:  5'- gGGggUGCAUCUGUUgUGAguccucuucuauuGCGGCGCGa -3'
miRNA:   3'- -CCuuGCGUAGACGA-ACU-------------CGUCGCGCa -5'
29213 5' -53.8 NC_006150.1 + 125459 1.1 0.005796
Target:  5'- cGGAACGCAUCUGCUUGAGCAGCGCGUc -3'
miRNA:   3'- -CCUUGCGUAGACGAACUCGUCGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.