Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29214 | 3' | -51.8 | NC_006150.1 | + | 131933 | 0.68 | 0.97555 |
Target: 5'- gGGCGaCGaCGgccuugCCGUCGUGAGCcaGACGGu -3' miRNA: 3'- -UCGUaGC-GUa-----GGCAGUACUCG--UUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 37030 | 0.66 | 0.992656 |
Target: 5'- aGGCGcCGCAgcuacagaUUCGUCGUGcAGCAgacuGCGAg -3' miRNA: 3'- -UCGUaGCGU--------AGGCAGUAC-UCGU----UGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 109007 | 0.66 | 0.993614 |
Target: 5'- uGCA-CGCGUCCGU---GcGCAGCGAg -3' miRNA: 3'- uCGUaGCGUAGGCAguaCuCGUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 45008 | 0.66 | 0.99447 |
Target: 5'- cGGCcaAUCGCAUCgGguagGAGUGGCGAc -3' miRNA: 3'- -UCG--UAGCGUAGgCaguaCUCGUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 196317 | 0.66 | 0.996497 |
Target: 5'- aAGUGUUGCAUCCagcUCGUGAGCcuCu- -3' miRNA: 3'- -UCGUAGCGUAGGc--AGUACUCGuuGcu -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 118245 | 0.66 | 0.996497 |
Target: 5'- cGGCGUgcucucccagcUGCAgaaUGUcCAUGGGCAGCGAc -3' miRNA: 3'- -UCGUA-----------GCGUag-GCA-GUACUCGUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 123723 | 0.67 | 0.99027 |
Target: 5'- cGUAUCGCuugucugAUCCGUCAaaaUGuGCAAUGc -3' miRNA: 3'- uCGUAGCG-------UAGGCAGU---ACuCGUUGCu -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 73939 | 0.67 | 0.986023 |
Target: 5'- cGCGUCGCGgccgCCGcUUgcGAGuCAACGAc -3' miRNA: 3'- uCGUAGCGUa---GGC-AGuaCUC-GUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 86318 | 0.68 | 0.984269 |
Target: 5'- uGGUAggagUGCAgaCCGUuacaugaccacCAUGAGCAACGAg -3' miRNA: 3'- -UCGUa---GCGUa-GGCA-----------GUACUCGUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 148886 | 0.68 | 0.980266 |
Target: 5'- cGCAccgUCGCuaccgggaugGUCCGUCAaugGAGCGuGCGAa -3' miRNA: 3'- uCGU---AGCG----------UAGGCAGUa--CUCGU-UGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 23877 | 0.69 | 0.972629 |
Target: 5'- uGCAagcucaucaaaacUUGCAUCUGUCAUGuuGcCAGCGAa -3' miRNA: 3'- uCGU-------------AGCGUAGGCAGUACu-C-GUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 171925 | 0.75 | 0.769979 |
Target: 5'- cAGCGuucUCGCcgCCGUCAUGAGUucUGAg -3' miRNA: 3'- -UCGU---AGCGuaGGCAGUACUCGuuGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 125941 | 1.1 | 0.009091 |
Target: 5'- aAGCAUCGCAUCCGUCAUGAGCAACGAg -3' miRNA: 3'- -UCGUAGCGUAGGCAGUACUCGUUGCU- -5' |
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29214 | 3' | -51.8 | NC_006150.1 | + | 94088 | 0.66 | 0.995904 |
Target: 5'- uGCcgCgGCcUCCGUCGugugUGGGUAACGGu -3' miRNA: 3'- uCGuaG-CGuAGGCAGU----ACUCGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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